cellOrigins
Finds RNASeq Source Tissues Using In Situ Hybridisation Data
Description
Finds the most likely originating tissue(s) and developmental stage(s) of tissue-specific RNA sequencing data. The package identifies both pure transcriptomes and mixtures of transcriptomes. The most likely identity is found through comparisons of the sequencing data with high-throughput in situ hybridisation patterns. Typical uses are the identification of cancer cell origins, validation of cell culture strain identities, validation of single-cell transcriptomes, and validation of identity and purity of flow-sorting and dissection sequencing products.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
CRAN incoming feasibility
Maintainer: ‘David Molnar <dmolnar100@icloud.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "David",
family = "Molnar",
role = c("aut", "cre"),
email = "dmolnar100@icloud.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘David Molnar <dmolnar100@icloud.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "David",
family = "Molnar",
role = c("aut", "cre"),
email = "dmolnar100@icloud.com")
as necessary.
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Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
CRAN incoming feasibility
Maintainer: ‘David Molnar <dmolnar100@icloud.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "David",
family = "Molnar",
role = c("aut", "cre"),
email = "dmolnar100@icloud.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘David Molnar <dmolnar100@icloud.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "David",
family = "Molnar",
role = c("aut", "cre"),
email = "dmolnar100@icloud.com")
as necessary.