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brainGraph

Graph Theory Analysis of Brain MRI Data

v3.1.1 · Oct 15, 2025 · GPL-3

Description

A set of tools for performing graph theory analysis of brain MRI data. It works with data from a Freesurfer analysis (cortical thickness, volumes, local gyrification index, surface area), diffusion tensor tractography data (e.g., from FSL) and resting-state fMRI data (e.g., from DPABI). It contains a graphical user interface for graph visualization and data exploration, along with several functions for generating useful figures.

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5 NOTE
9 OK
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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 OK
r-devel-windows-x86_64 NOTE
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

Rd \usage sections

S3 methods shown with full name in Rd file 'glm_influence.Rd':
  ‘dffits.bg_GLM’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
NOTE r-devel-linux-x86_64-debian-gcc

Rd \usage sections

S3 methods shown with full name in Rd file 'glm_influence.Rd':
  ‘dffits.bg_GLM’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
NOTE r-devel-linux-x86_64-fedora-clang

Rd \usage sections

S3 methods shown with full name in Rd file 'glm_influence.Rd':
  ‘dffits.bg_GLM’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
NOTE r-devel-linux-x86_64-fedora-gcc

Rd \usage sections

S3 methods shown with full name in Rd file 'glm_influence.Rd':
  ‘dffits.bg_GLM’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
OK r-devel-macos-arm64

*


            
NOTE r-devel-windows-x86_64

Rd \usage sections

S3 methods shown with full name in Rd file 'glm_influence.Rd':
  'dffits.bg_GLM'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
OK r-oldrel-macos-arm64

*


            
OK r-oldrel-macos-x86_64

*


            
OK r-oldrel-windows-x86_64

*


            
OK r-patched-linux-x86_64

*


            
OK r-release-linux-x86_64

*


            
OK r-release-macos-arm64

*


            
OK r-release-macos-x86_64

*


            
OK r-release-windows-x86_64

*


            

Check History

NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-devel-linux-x86_64-debian-clang

Rd \usage sections

S3 methods shown with full name in Rd file 'glm_influence.Rd':
  ‘dffits.bg_GLM’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
NOTE r-devel-linux-x86_64-debian-gcc

Rd \usage sections

S3 methods shown with full name in Rd file 'glm_influence.Rd':
  ‘dffits.bg_GLM’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
NOTE r-devel-linux-x86_64-fedora-clang

Rd \usage sections

S3 methods shown with full name in Rd file 'glm_influence.Rd':
  ‘dffits.bg_GLM’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
NOTE r-devel-linux-x86_64-fedora-gcc

Rd \usage sections

S3 methods shown with full name in Rd file 'glm_influence.Rd':
  ‘dffits.bg_GLM’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
NOTE r-devel-windows-x86_64

Rd \usage sections

S3 methods shown with full name in Rd file 'glm_influence.Rd':
  'dffits.bg_GLM'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.

Reverse Dependencies (3)

Dependency Network

Dependencies Reverse dependencies igraph abind data.table doParallel foreach lattice MASS Matrix permute PopulateR etree priorCON brainGraph

Version History

new 3.1.1 Mar 9, 2026