bmass
Bayesian Multivariate Analysis of Summary Statistics
Description
Multivariate tool for analyzing genome-wide association study results in the form of univariate summary statistics. The goal of 'bmass' is to comprehensively test all possible multivariate models given the phenotypes and datasets provided. Multivariate models are determined by assigning each phenotype to being either Unassociated (U), Directly associated (D) or Indirectly associated (I) with the genetic variant of interest. Test results for each model are presented in the form of Bayes factors, thereby allowing direct comparisons between models. The underlying framework implemented here is based on the modeling developed in "A Unified Framework for Association Analysis with Multiple Related Phenotypes", M. Stephens (2013) <doi:10.1371/journal.pone.0065245>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
CRAN incoming feasibility
Maintainer: ‘Michael Turchin <mturchin20@uchicago.edu>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following URLs which should use \doi (with the DOI name only):
File ‘GetModelPriorMatrix.Rd’:
https://doi.org/10.1371/journal.pone.0065245
File ‘GlobalLipids2013.GWASsnps.Rd’:
https://doi.org/10.1038/ng.2797
CRAN incoming feasibility
Maintainer: ‘Michael Turchin <mturchin20@uchicago.edu>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following URLs which should use \doi (with the DOI name only):
File ‘GetModelPriorMatrix.Rd’:
https://doi.org/10.1371/journal.pone.0065245
File ‘GlobalLipids2013.GWASsnps.Rd’:
https://doi.org/10.1038/ng.2797
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Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
CRAN incoming feasibility
Maintainer: ‘Michael Turchin <mturchin20@uchicago.edu>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following URLs which should use \doi (with the DOI name only):
File ‘GetModelPriorMatrix.Rd’:
https://doi.org/10.1371/journal.pone.0065245
File ‘GlobalLipids2013.GWASsnps.Rd’:
https://doi.org/10.1038/ng.2797
CRAN incoming feasibility
Maintainer: ‘Michael Turchin <mturchin20@uchicago.edu>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following URLs which should use \doi (with the DOI name only):
File ‘GetModelPriorMatrix.Rd’:
https://doi.org/10.1371/journal.pone.0065245
File ‘GlobalLipids2013.GWASsnps.Rd’:
https://doi.org/10.1038/ng.2797