biospear
Biomarker Selection in Penalized Regression Models
Description
Provides some tools for developing and validating prediction models, estimate expected survival of patients and visualize them graphically. Most of the implemented methods are based on penalized regressions such as: the lasso (Tibshirani R (1996)), the elastic net (Zou H et al. (2005) <doi:10.1111/j.1467-9868.2005.00503.x>), the adaptive lasso (Zou H (2006) <doi:10.1198/016214506000000735>), the stability selection (Meinshausen N et al. (2010) <doi:10.1111/j.1467-9868.2010.00740.x>), some extensions of the lasso (Ternes et al. (2016) <doi:10.1002/sim.6927>), some methods for the interaction setting (Ternes N et al. (2016) <doi:10.1002/bimj.201500234>), or others. A function generating simulated survival data set is also provided.
Downloads
259
Last 30 days
12019th
463
Last 90 days
463
Last year
Trend: +27% (30d vs prior 30d)
CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
CRAN incoming feasibility
Maintainer: ‘Stefan Michiels <stefan.michiels@gustaveroussy.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Nils",
family = "Ternes",
role = "aut"),
person(given = "Federico",
family = "Rotolo",
role = "aut"),
person(given = "Stefan",
family = "Michiels",
role = c("aut", "cre"),
email = "stefan.michiels@gustaveroussy.fr"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Stefan Michiels <stefan.michiels@gustaveroussy.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Nils",
family = "Ternes",
role = "aut"),
person(given = "Federico",
family = "Rotolo",
role = "aut"),
person(given = "Stefan",
family = "Michiels",
role = c("aut", "cre"),
email = "stefan.michiels@gustaveroussy.fr"))
as necessary.
*
*
*
*
*
*
*
*
*
*
*
*
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
CRAN incoming feasibility
Maintainer: ‘Stefan Michiels <stefan.michiels@gustaveroussy.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Nils",
family = "Ternes",
role = "aut"),
person(given = "Federico",
family = "Rotolo",
role = "aut"),
person(given = "Stefan",
family = "Michiels",
role = c("aut", "cre"),
CRAN incoming feasibility
Maintainer: ‘Stefan Michiels <stefan.michiels@gustaveroussy.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Nils",
family = "Ternes",
role = "aut"),
person(given = "Federico",
family = "Rotolo",
role = "aut"),
person(given = "Stefan",
family = "Michiels",
role = c("aut", "cre"),