bios2mds
From Biological Sequences to Multidimensional Scaling
v1.2.3
·
Apr 7, 2020
·
GPL
Description
Utilities dedicated to the analysis of biological sequences by metric MultiDimensional Scaling with projection of supplementary data. It contains functions for reading multiple sequence alignment files, calculating distance matrices, performing metric multidimensional scaling and visualizing results.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (16 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Marie Chabbert <marie.chabbert@univ-angers.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Julien", "Pele", "with", "Jean-Michel"),
family = "Becu",
role = "aut"),
person(given = c("Rym", "Ben"),
family = "Boubaker",
role = "aut"),
person(given = "Herve",
family = "Abdi",
role = "aut"),
person(given = "Marie",
family = "Chabbert",
role = c("aut", "cre"),
email = "marie.chabbert@univ-angers.fr"))
as necessary.
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Marie Chabbert <marie.chabbert@univ-angers.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Julien", "Pele", "with", "Jean-Michel"),
family = "Becu",
role = "aut"),
person(given = c("Rym", "Ben"),
family = "Boubaker",
role = "aut"),
person(given = "Herve",
family = "Abdi",
role = "aut"),
person(given = "Marie",
family = "Chabbert",
role = c("aut", "cre"),
email = "marie.chabbert@univ-angers.fr"))
as necessary.
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
134 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Marie Chabbert <marie.chabbert@univ-angers.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Julien", "Pele", "with", "Jean-Michel"),
family = "Becu",
role = "aut"),
person(given = c("Rym", "Ben"),
family = "Boubaker",
role = "aut"),
person(given = "Herve",
family = "Abdi",
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Marie Chabbert <marie.chabbert@univ-angers.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Julien", "Pele", "with", "Jean-Michel"),
family = "Becu",
role = "aut"),
person(given = c("Rym", "Ben"),
family = "Boubaker",
role = "aut"),
person(given = "Herve",
family = "Abdi",
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
118 | a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
| ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
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Version History
new
1.2.3
Mar 9, 2026