bioregion

Comparison of Bioregionalization Methods

v1.3.0 · Jan 23, 2026 · GPL-3

Description

The main purpose of this package is to propose a transparent methodological framework to compare bioregionalization methods based on hierarchical and non-hierarchical clustering algorithms (Kreft & Jetz (2010) <doi:10.1111/j.1365-2699.2010.02375.x>) and network algorithms (Lenormand et al. (2019) <doi:10.1002/ece3.4718> and Leroy et al. (2019) <doi:10.1111/jbi.13674>).

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CRAN Check Status

2 ERROR

2 NOTE

10 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	404.2s
r-devel-linux-x86_64-debian-gcc	OK	271.5s
r-devel-linux-x86_64-fedora-clang	OK	670.3s
r-devel-linux-x86_64-fedora-gcc	OK	726.6s
r-devel-macos-arm64	OK	118s
r-devel-windows-x86_64	OK	422s
r-oldrel-macos-arm64	ERROR	93s
r-oldrel-macos-x86_64	NOTE	680s
r-oldrel-windows-x86_64	NOTE	584s
r-patched-linux-x86_64	OK	391.1s
r-release-linux-x86_64	OK	387.1s
r-release-macos-arm64	ERROR	86s
r-release-macos-x86_64	OK	425s
r-release-windows-x86_64	OK	409s

Check details (15 non-OK)

OK r-devel-linux-x86_64-debian-clang

OK r-devel-linux-x86_64-debian-gcc

OK r-devel-linux-x86_64-fedora-clang

OK r-devel-linux-x86_64-fedora-gcc

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

NOTE r-oldrel-macos-arm64

installed package size

  installed size is  8.5Mb
  sub-directories of 1Mb or more:
    data   1.6Mb
    help   4.7Mb

ERROR r-oldrel-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘a5_2_summary_metrics.Rmd’ using rmarkdown

Quitting from a5_2_summary_metrics.Rmd:122-153 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `install_binaries()`:
! object 'testlouvain' not found
---
Backtrace:
    ▆
 1. └─bioregion::install_binaries(verbose = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'a5_2_summary_metrics.Rmd' failed with diagnostics:
object 'testlouvain' not found
--- failed re-building ‘a5_2_summary_metrics.Rmd’

--- re-building ‘a5_3_compare_bioregionalizations.Rmd’ using rmarkdown
--- finished re-building ‘a5_3_compare_bioregionalizations.Rmd’

--- re-building ‘bioregion.Rmd’ using rmarkdown
--- finished re-building ‘bioregion.Rmd’

--- re-building ‘citations.Rmd’ using rmarkdown
--- finished re-building ‘citations.Rmd’

SUMMARY: processing the following file failed:
  ‘a5_2_summary_metrics.Rmd’

Error: Vignette re-building failed.
Execution halted

NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  9.6Mb
  sub-directories of 1Mb or more:
    data   2.7Mb
    help   4.7Mb

NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  8.7Mb
  sub-directories of 1Mb or more:
    data   1.6Mb
    help   4.7Mb

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

ERROR r-release-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘a5_2_summary_metrics.Rmd’ using rmarkdown

Quitting from a5_2_summary_metrics.Rmd:122-153 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `install_binaries()`:
! object 'testlouvain' not found
---
Backtrace:
    ▆
 1. └─bioregion::install_binaries(verbose = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'a5_2_summary_metrics.Rmd' failed with diagnostics:
object 'testlouvain' not found
--- failed re-building ‘a5_2_summary_metrics.Rmd’

--- re-building ‘a5_3_compare_bioregionalizations.Rmd’ using rmarkdown
--- finished re-building ‘a5_3_compare_bioregionalizations.Rmd’

--- re-building ‘bioregion.Rmd’ using rmarkdown
--- finished re-building ‘bioregion.Rmd’

--- re-building ‘citations.Rmd’ using rmarkdown
--- finished re-building ‘citations.Rmd’

SUMMARY: processing the following file failed:
  ‘a5_2_summary_metrics.Rmd’

Error: Vignette re-building failed.
Execution halted

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

ERROR 10 OK · 2 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 9, 2026

ERROR r-release-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘a5_2_summary_metrics.Rmd’ using rmarkdown

Quitting from a5_2_summary_metrics.Rmd:122-153 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `install_binaries()`:
! object 'testlouvain' not found
---
Backtrace:
    ▆
 1. └─bioregion::install_binaries(verbose = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vig

ERROR r-oldrel-macos-arm64

installed package size

  installed size is  8.5Mb
  sub-directories of 1Mb or more:
    data   1.6Mb
    help   4.7Mb

NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  9.6Mb
  sub-directories of 1Mb or more:
    data   2.7Mb
    help   4.7Mb

NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  8.7Mb
  sub-directories of 1Mb or more:
    data   1.6Mb
    help   4.7Mb

Dependency Network

Version History

new 1.3.0 Mar 10, 2026