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bio3d

Biological Structure Analysis

v2.4-5 · Oct 29, 2024 · GPL (>= 2)

Description

Utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. Please refer to the URLs below for more information.

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CRAN Check Status

2 NOTE
12 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

installed package size

  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    R      1.0Mb
    libs   3.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  6.6Mb
  sub-directories of 1Mb or more:
    R      1.0Mb
    libs   2.9Mb
OK r-oldrel-windows-x86_64

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OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    R      1.0Mb
    libs   3.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  6.6Mb
  sub-directories of 1Mb or more:
    R      1.0Mb
    libs   2.9Mb

Reverse Dependencies (10)

depends

suggests

Dependency Network

Dependencies Reverse dependencies Rcpp Bios2cor EnvNJ SOMMD aLFQ compas orthGS ptm r3dmol rPDBapi AntibodyForests bio3d

Version History

new 2.4-5 Mar 9, 2026