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alphabetr

Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells

v0.2.2 · Jan 28, 2017 · AGPL (>= 3)

Description

Provides algorithms for frequency-based pairing of alpha-beta T cell receptors.

Downloads

226

Last 30 days

14412th

600

Last 90 days

600

Last year

Trend: -39.6% (30d vs prior 30d)

CRAN Check Status

7 NOTE
7 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Edward Lee <email.edwardlee@gmail.com>’

The BugReports field in DESCRIPTION has
  http://github.com/edwardslee/alphabetr
which should likely be
  http://github.com/edwardslee/alphabetr/issues
instead.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Edward Lee <email.edwardlee@gmail.com>’

The BugReports field in DESCRIPTION has
  http://github.com/edwardslee/alphabetr
which should likely be
  http://github.com/edwardslee/alphabetr/issues
instead.
NOTE r-devel-linux-x86_64-fedora-clang

compiled code

File ‘alphabetr/libs/alphabetr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
NOTE r-devel-linux-x86_64-fedora-gcc

compiled code

File ‘alphabetr/libs/alphabetr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
OK r-devel-macos-arm64

*


            
OK r-devel-windows-x86_64

*


            
NOTE r-oldrel-macos-arm64

LazyData

  'LazyData' is specified without a 'data' directory
NOTE r-oldrel-macos-x86_64

LazyData

  'LazyData' is specified without a 'data' directory
NOTE r-oldrel-windows-x86_64

LazyData

  'LazyData' is specified without a 'data' directory
OK r-patched-linux-x86_64

*


            
OK r-release-linux-x86_64

*


            
OK r-release-macos-arm64

*


            
OK r-release-macos-x86_64

*


            
OK r-release-windows-x86_64

*


            

Check History

NOTE 7 OK · 7 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Edward Lee <email.edwardlee@gmail.com>’

The BugReports field in DESCRIPTION has
  http://github.com/edwardslee/alphabetr
which should likely be
  http://github.com/edwardslee/alphabetr/issues
instead.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Edward Lee <email.edwardlee@gmail.com>’

The BugReports field in DESCRIPTION has
  http://github.com/edwardslee/alphabetr
which should likely be
  http://github.com/edwardslee/alphabetr/issues
instead.
NOTE r-devel-linux-x86_64-fedora-clang

compiled code

File ‘alphabetr/libs/alphabetr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
NOTE r-devel-linux-x86_64-fedora-gcc

compiled code

File ‘alphabetr/libs/alphabetr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
NOTE r-oldrel-macos-arm64

LazyData

  'LazyData' is specified without a 'data' directory
NOTE r-oldrel-macos-x86_64

LazyData

  'LazyData' is specified without a 'data' directory
NOTE r-oldrel-windows-x86_64

LazyData

  'LazyData' is specified without a 'data' directory

Dependency Network

Dependencies Reverse dependencies Rcpp clue dplyr multicool alphabetr

Version History

new 0.2.2 Mar 9, 2026