WhiteLabRt
Novel Methods for Reproduction Number Estimation, Back-Calculation, and Forecasting
Description
A collection of functions related to novel methods for estimating R(t), created by the lab of Professor Laura White. Currently implemented methods include two-step Bayesian back-calculation and now-casting for line-list data with missing reporting delays, adapted in 'STAN' from Li (2021) <doi:10.1371/journal.pcbi.1009210>, and calculation of time-varying reproduction number assuming a flux between various adjacent states, adapted into 'STAN' from Zhou (2021) <doi:10.1371/journal.pcbi.1010434>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (17 non-OK)
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for GNU extensions in Makefiles
GNU make is a SystemRequirements.
installed package size
installed size is 92.1Mb
sub-directories of 1Mb or more:
data 4.2Mb
libs 87.3Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
installed package size
installed size is 81.4Mb
sub-directories of 1Mb or more:
data 4.2Mb
libs 76.6Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
installed package size
installed size is 8.3Mb
sub-directories of 1Mb or more:
data 4.2Mb
libs 3.5Mb
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Check History
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
installed package size
installed size is 92.1Mb
sub-directories of 1Mb or more:
data 4.2Mb
libs 87.3Mb
installed package size
installed size is 81.4Mb
sub-directories of 1Mb or more:
data 4.2Mb
libs 76.6Mb
installed package size
installed size is 8.3Mb
sub-directories of 1Mb or more:
data 4.2Mb
libs 3.5Mb