TriLLIEM
Log-Linear Modelling of Triad Genotype Data
v0.1.0
·
Mar 5, 2026
·
MIT + file LICENSE
Description
Triad Log-Linear modelling of Imprinting Environmental interactions, and Maternal effects (TriLLIEM). This is an implementation of the log-linear model described in a series of papers, see for example Ainsworth et al. (2010) <doi:10.1002/gepi.20547>.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | ERROR |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | ERROR |
| r-oldrel-macos-x86_64 | ERROR |
| r-oldrel-windows-x86_64 | ERROR |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | ERROR |
| r-release-macos-x86_64 | OK |
Check details (11 non-OK)
OK
r-devel-linux-x86_64-debian-gcc
*
OK
r-devel-linux-x86_64-fedora-clang
*
OK
r-devel-linux-x86_64-fedora-gcc
*
ERROR
r-devel-macos-arm64
tests
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(TriLLIEM)
>
> test_check("TriLLIEM")
Saving _problems/test-fullview-3.R
Saving _problems/test-simulate-3.R
[ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ]
══ Skipped tests (10) ══════════════════════════════════════════════════════════
• On CRAN (10): 'test-TriLLIEM.R:1:1', 'test-TriLLIEM.R:6:1',
'test-anova.TriLLIEM.R:1:1', 'test-anova.TriLLIEM.R:7:1',
'test-fullview.R:6:1', 'test-simulate.R:6:1', 'test-simulate.R:18:1',
'test-summary.TriLLIEM.R:1:1', 'test-summary.TriLLIEM.R:6:1',
'test-summary.TriLLIEM.R:36:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-fullview.R:3:3'): expected example_dat4R ─────────────────────
Expected `fullview(simulateData())` to be identical to `fullview(example_dat4R)`.
Differences:
actual$prMF | expected$prMF
[1] 0.240100000000000036 - 0.240099999999999980 [1]
[2] 0.205800000000000011 - 0.205799999999999983 [2]
[3] 0.205800000000000011 - 0.205799999999999983 [3]
[4] 0.205800000000000011 - 0.205799999999999983 [4]
[5] 0.205800000000000011 - 0.205799999999999983 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.176399999999999973 | 0.176399999999999973 [8]
actual$prMFCOrg | expected$prMFCOrg
[1] 0.240100000000000036 - 0.240099999999999980 [1]
[2] 0.102900000000000005 - 0.102899999999999991 [2]
[3] 0.102900000000000005 - 0.102899999999999991 [3]
[4] 0.102900000000000005 - 0.102899999999999991 [4]
[5] 0.102900000000000005 - 0.102899999999999991 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.044099999999999993 | 0.044099999999999993 [8]
actual$PrCMFEgivenD | expected$PrCMFEgivenD
[1] 0.2400999999999999246 - 0.2401000000000000079 [1]
[2] 0.1028999999999999637 - 0.1029000000000000054 [2]
[3] 0.1028999999999999637 - 0.1029000000000000054 [3]
[4] 0.1028999999999999637 - 0.1029000000000000054 [4]
[5] 0.1028999999999999637 - 0.1029000000000000054 [5]
[6] 0.0440999999999999795 - 0.0441000000000000072 [6]
[7] 0.0440999999999999795 - 0.0441000000000000072 [7]
[8] 0.0440999999999999726 - 0.0441000000000000003 [8]
[9] 0.0440999999999999726 - 0.0441000000000000003 [9]
[10] 0.0440999999999999726 - 0.0441000000000000003 [10]
... ... ... and 6 more ...
── Failure ('test-simulate.R:3:3'): expected example_dat4R ─────────────────────
Expected `simulateData()` to be identical to `example_dat4R`.
Differences:
attr(actual, 'ALL')$prMF | attr(expected, 'ALL')$prMF
[1] 0.240100000000000036 - 0.240099999999999980 [1]
[2] 0.205800000000000011 - 0.205799999999999983 [2]
[3] 0.205800000000000011 - 0.205799999999999983 [3]
[4] 0.205800000000000011 - 0.205799999999999983 [4]
[5] 0.205800000000000011 - 0.205799999999999983 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.176399999999999973 | 0.176399999999999973 [8]
attr(actual, 'ALL')$prMFCOrg | attr(expected, 'ALL')$prMFCOrg
[1] 0.240100000000000036 - 0.240099999999999980 [1]
[2] 0.102900000000000005 - 0.102899999999999991 [2]
[3] 0.102900000000000005 - 0.102899999999999991 [3]
[4] 0.102900000000000005 - 0.102899999999999991 [4]
[5] 0.102900000000000005 - 0.102899999999999991 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.044099999999999993 | 0.044099999999999993 [8]
attr(actual, 'ALL')$PrCMFEgivenD vs attr(expected, 'ALL')$PrCMFEgivenD
- 0.2400999999999999246
+ 0.2401000000000000079
- 0.1028999999999999637
+ 0.1029000000000000054
- 0.1028999999999999637
+ 0.1029000000000000054
- 0.1028999999999999637
+ 0.1029000000000000054
- 0.1028999999999999637
+ 0.1029000000000000054
- 0.0440999999999999795
+ 0.0441000000000000072
- 0.0440999999999999795
+ 0.0441000000000000072
- 0.0440999999999999726
+ 0.0441000000000000003
- 0.0440999999999999726
+ 0.0441000000000000003
- 0.0440999999999999726
+ 0.0441000000000000003
and 6 more ...
[ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ]
Error:
! Test failures.
Execution halted
OK
r-devel-windows-x86_64
*
ERROR
r-oldrel-macos-arm64
tests
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(TriLLIEM)
>
> test_check("TriLLIEM")
Saving _problems/test-fullview-3.R
Saving _problems/test-simulate-3.R
[ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ]
══ Skipped tests (10) ══════════════════════════════════════════════════════════
• On CRAN (10): 'test-TriLLIEM.R:1:1', 'test-TriLLIEM.R:6:1',
'test-anova.TriLLIEM.R:1:1', 'test-anova.TriLLIEM.R:7:1',
'test-fullview.R:6:1', 'test-simulate.R:6:1', 'test-simulate.R:18:1',
'test-summary.TriLLIEM.R:1:1', 'test-summary.TriLLIEM.R:6:1',
'test-summary.TriLLIEM.R:36:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-fullview.R:3:3'): expected example_dat4R ─────────────────────
Expected `fullview(simulateData())` to be identical to `fullview(example_dat4R)`.
Differences:
actual vs expected
prMF prMFCOrg PrCMFEgivenD count
actual[1, ] 0.2401 0.2401 0.2401 234
- actual[2, ] 0.2058 0.1029 0.1029 112
+ expected[2, ] 0.2058 0.1029 0.1029 120
- actual[3, ] 0.2058 0.1029 0.1029 84
+ expected[3, ] 0.2058 0.1029 0.1029 102
- actual[4, ] 0.2058 0.1029 0.1029 102
+ expected[4, ] 0.2058 0.1029 0.1029 84
- actual[5, ] 0.2058 0.1029 0.1029 120
+ expected[5, ] 0.2058 0.1029 0.1029 112
- actual[6, ] 0.0441 0.0441 0.0441 37
+ expected[6, ] 0.0441 0.0441 0.0441 52
- actual[7, ] 0.0441 0.0441 0.0441 42
+ expected[7, ] 0.0441 0.0441 0.0441 40
- actual[8, ] 0.1764 0.0441 0.0441 35
+ expected[8, ] 0.1764 0.0441 0.0441 37
- actual[9, ] 0.1764 0.0441 0.0441 46
+ expected[9, ] 0.1764 0.0441 0.0441 35
- actual[10, ] 0.1764 0.0441 0.0441 52
+ expected[10, ] 0.1764 0.0441 0.0441 46
and 4 more ...
actual$prMF | expected$prMF
[1] 0.240099999999999980 | 0.240099999999999980 [1]
[2] 0.205800000000000011 - 0.205799999999999983 [2]
[3] 0.205800000000000011 - 0.205799999999999983 [3]
[4] 0.205800000000000011 - 0.205799999999999983 [4]
[5] 0.205800000000000011 - 0.205799999999999983 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.176400000000000029 - 0.176399999999999973 [8]
[9] 0.176400000000000029 - 0.176399999999999973 [9]
[10] 0.176400000000000029 - 0.176399999999999973 [10]
... ... ... and 4 more ...
actual$prMFCOrg | expected$prMFCOrg
[1] 0.240099999999999980 | 0.240099999999999980 [1]
[2] 0.102900000000000005 - 0.102899999999999991 [2]
[3] 0.102900000000000005 - 0.102899999999999991 [3]
[4] 0.102900000000000005 - 0.102899999999999991 [4]
[5] 0.102900000000000005 - 0.102899999999999991 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.044100000000000007 - 0.044099999999999993 [8]
[9] 0.044100000000000007 - 0.044099999999999993 [9]
[10] 0.044100000000000007 - 0.044099999999999993 [10]
... ... ... and 4 more ...
actual$PrCMFEgivenD | expected$PrCMFEgivenD
[1] 0.2400999999999999246 - 0.2401000000000000079 [1]
[2] 0.1028999999999999776 - 0.1029000000000000054 [2]
[3] 0.1028999999999999776 - 0.1029000000000000054 [3]
[4] 0.1028999999999999776 - 0.1029000000000000054 [4]
[5] 0.1028999999999999776 - 0.1029000000000000054 [5]
[6] 0.0440999999999999934 - 0.0441000000000000072 [6]
[7] 0.0440999999999999934 - 0.0441000000000000072 [7]
[8] 0.0441000000000000003 | 0.0441000000000000003 [8]
[9] 0.0441000000000000003 | 0.0441000000000000003 [9]
[10] 0.0441000000000000003 | 0.0441000000000000003 [10]
... ... ... and 6 more ...
`actual$count[1:14]`: 234 112 84 102 120 37 42 35 46 52 and 4 more...
`expected$count[1:14]`: 234 120 102 84 112 52 40 37 35 46 ...
── Failure ('test-simulate.R:3:3'): expected example_dat4R ─────────────────────
Expected `simulateData()` to be identical to `example_dat4R`.
Differences:
attr(actual, 'ALL') vs attr(expected, 'ALL')
prMF prMFCOrg PrCMFEgivenD count
attr(actual, 'ALL')[1, ] 0.2401 0.2401 0.2401 234
- attr(actual, 'ALL')[2, ] 0.2058 0.1029 0.1029 112
+ attr(expected, 'ALL')[2, ] 0.2058 0.1029 0.1029 120
- attr(actual, 'ALL')[3, ] 0.2058 0.1029 0.1029 84
+ attr(expected, 'ALL')[3, ] 0.2058 0.1029 0.1029 102
- attr(actual, 'ALL')[4, ] 0.2058 0.1029 0.1029 102
+ attr(expected, 'ALL')[4, ] 0.2058 0.1029 0.1029 84
- attr(actual, 'ALL')[5, ] 0.2058 0.1029 0.1029 120
+ attr(expected, 'ALL')[5, ] 0.2058 0.1029 0.1029 112
- attr(actual, 'ALL')[6, ] 0.0441 0.0441 0.0441 37
+ attr(expected, 'ALL')[6, ] 0.0441 0.0441 0.0441 52
- attr(actual, 'ALL')[7, ] 0.0441 0.0441 0.0441 42
+ attr(expected, 'ALL')[7, ] 0.0441 0.0441 0.0441 40
- attr(actual, 'ALL')[8, ] 0.1764 0.0441 0.0441 35
+ attr(expected, 'ALL')[8, ] 0.1764 0.0441 0.0441 37
- attr(actual, 'ALL')[9, ] 0.1764 0.0441 0.0441 46
+ attr(expected, 'ALL')[9, ] 0.1764 0.0441 0.0441 35
- attr(actual, 'ALL')[10, ] 0.1764 0.0441 0.0441 52
+ attr(expected, 'ALL')[10, ] 0.1764 0.0441 0.0441 46
and 4 more ...
attr(actual, 'ALL')$prMF | attr(expected, 'ALL')$prMF
[1] 0.240099999999999980 | 0.240099999999999980 [1]
[2] 0.205800000000000011 - 0.205799999999999983 [2]
[3] 0.205800000000000011 - 0.205799999999999983 [3]
[4] 0.205800000000000011 - 0.205799999999999983 [4]
[5] 0.205800000000000011 - 0.205799999999999983 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.176400000000000029 - 0.176399999999999973 [8]
[9] 0.176400000000000029 - 0.176399999999999973 [9]
[10] 0.176400000000000029 - 0.176399999999999973 [10]
... ... ... and 4 more ...
attr(actual, 'ALL')$prMFCOrg[1:14] vs attr(expected, 'ALL')$prMFCOrg[1:14]
0.240099999999999980
- 0.102900000000000005
+ 0.102899999999999991
- 0.102900000000000005
+ 0.102899999999999991
- 0.102900000000000005
+ 0.102899999999999991
- 0.102900000000000005
+ 0.102899999999999991
0.044100000000000000
0.044100000000000000
- 0.044100000000000007
+ 0.044099999999999993
- 0.044100000000000007
+ 0.044099999999999993
- 0.044100000000000007
+ 0.044099999999999993
and 4 more ...
attr(actual, 'ALL')$PrCMFEgivenD vs attr(expected, 'ALL')$PrCMFEgivenD
- 0.2400999999999999246
+ 0.2401000000000000079
- 0.1028999999999999776
+ 0.1029000000000000054
- 0.1028999999999999776
+ 0.1029000000000000054
- 0.1028999999999999776
+ 0.1029000000000000054
- 0.1028999999999999776
+ 0.1029000000000000054
- 0.0440999999999999934
+ 0.0441000000000000072
- 0.0440999999999999934
+ 0.0441000000000000072
0.0441000000000000003
0.0441000000000000003
0.0441000000000000003
and 6 more ...
attr(actual, 'ALL')$count | attr(expected, 'ALL')$count
[1] 234 | 234 [1]
[2] 112 - 120 [2]
[3] 84 - 102 [3]
[4] 102 - 84 [4]
[5] 120 - 112 [5]
[6] 37 - 52 [6]
[7] 42 - 40 [7]
[8] 35 - 37 [8]
[9] 46 - 35 [9]
[10] 52 - 46 [10]
... ... ... and 4 more ...
actual vs expected
count
actual[1, ] 234
- actual[2, ] 112
+ expected[2, ] 120
- actual[3, ] 84
+ expected[3, ] 102
- actual[4, ] 102
+ expected[4, ] 84
- actual[5, ] 120
+ expected[5, ] 112
- actual[6, ] 37
+ expected[6, ] 52
- actual[7, ] 42
+ expected[7, ] 40
- actual[8, ] 35
+ expected[8, ] 37
- actual[9, ] 98
+ expected[9, ] 81
- actual[10, ] 40
+ expected[10, ] 42
and 3 more ...
`actual$count[1:13]`: 234 112 84 102 120 37 42 35 98 40 and 3 more...
`expected$count[1:13]`: 234 120 102 84 112 52 40 37 81 42 ...
[ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ]
Error:
! Test failures.
Execution halted
ERROR
r-oldrel-macos-x86_64
tests
Running ‘testthat.R’ [9s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(TriLLIEM)
>
> test_check("TriLLIEM")
Saving _problems/test-fullview-3.R
Saving _problems/test-simulate-3.R
[ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ]
══ Skipped tests (10) ══════════════════════════════════════════════════════════
• On CRAN (10): 'test-TriLLIEM.R:1:1', 'test-TriLLIEM.R:6:1',
'test-anova.TriLLIEM.R:1:1', 'test-anova.TriLLIEM.R:7:1',
'test-fullview.R:6:1', 'test-simulate.R:6:1', 'test-simulate.R:18:1',
'test-summary.TriLLIEM.R:1:1', 'test-summary.TriLLIEM.R:6:1',
'test-summary.TriLLIEM.R:36:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-fullview.R:3:3'): expected example_dat4R ─────────────────────
Expected `fullview(simulateData())` to be identical to `fullview(example_dat4R)`.
Differences:
actual vs expected
prMF prMFCOrg PrCMFEgivenD count
actual[1, ] 0.2401 0.2401 0.2401 234
- actual[2, ] 0.2058 0.1029 0.1029 112
+ expected[2, ] 0.2058 0.1029 0.1029 120
- actual[3, ] 0.2058 0.1029 0.1029 84
+ expected[3, ] 0.2058 0.1029 0.1029 102
- actual[4, ] 0.2058 0.1029 0.1029 102
+ expected[4, ] 0.2058 0.1029 0.1029 84
- actual[5, ] 0.2058 0.1029 0.1029 120
+ expected[5, ] 0.2058 0.1029 0.1029 112
- actual[6, ] 0.0441 0.0441 0.0441 37
+ expected[6, ] 0.0441 0.0441 0.0441 52
- actual[7, ] 0.0441 0.0441 0.0441 42
+ expected[7, ] 0.0441 0.0441 0.0441 40
- actual[8, ] 0.1764 0.0441 0.0441 35
+ expected[8, ] 0.1764 0.0441 0.0441 37
- actual[9, ] 0.1764 0.0441 0.0441 46
+ expected[9, ] 0.1764 0.0441 0.0441 35
- actual[10, ] 0.1764 0.0441 0.0441 52
+ expected[10, ] 0.1764 0.0441 0.0441 46
and 4 more ...
actual$prMF | expected$prMF
[1] 0.240099999999999980 | 0.240099999999999980 [1]
[2] 0.205800000000000011 - 0.205799999999999983 [2]
[3] 0.205800000000000011 - 0.205799999999999983 [3]
[4] 0.205800000000000011 - 0.205799999999999983 [4]
[5] 0.205800000000000011 - 0.205799999999999983 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.176400000000000029 - 0.176399999999999973 [8]
[9] 0.176400000000000029 - 0.176399999999999973 [9]
[10] 0.176400000000000029 - 0.176399999999999973 [10]
... ... ... and 4 more ...
actual$prMFCOrg | expected$prMFCOrg
[1] 0.240099999999999980 | 0.240099999999999980 [1]
[2] 0.102900000000000005 - 0.102899999999999991 [2]
[3] 0.102900000000000005 - 0.102899999999999991 [3]
[4] 0.102900000000000005 - 0.102899999999999991 [4]
[5] 0.102900000000000005 - 0.102899999999999991 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.044100000000000007 - 0.044099999999999993 [8]
[9] 0.044100000000000007 - 0.044099999999999993 [9]
[10] 0.044100000000000007 - 0.044099999999999993 [10]
... ... ... and 4 more ...
actual$PrCMFEgivenD | expected$PrCMFEgivenD
[1] 0.2400999999999999801 - 0.2401000000000000079 [1]
[2] 0.1029000000000000054 | 0.1029000000000000054 [2]
[3] 0.1029000000000000054 | 0.1029000000000000054 [3]
[4] 0.1029000000000000054 | 0.1029000000000000054 [4]
[5] 0.1029000000000000054 | 0.1029000000000000054 [5]
[6] 0.0441000000000000003 - 0.0441000000000000072 [6]
[7] 0.0441000000000000003 - 0.0441000000000000072 [7]
[8] 0.0441000000000000072 - 0.0441000000000000003 [8]
[9] 0.0441000000000000072 - 0.0441000000000000003 [9]
[10] 0.0441000000000000072 - 0.0441000000000000003 [10]
... ... ... and 6 more ...
`actual$count[1:14]`: 234 112 84 102 120 37 42 35 46 52 and 4 more...
`expected$count[1:14]`: 234 120 102 84 112 52 40 37 35 46 ...
── Failure ('test-simulate.R:3:3'): expected example_dat4R ─────────────────────
Expected `simulateData()` to be identical to `example_dat4R`.
Differences:
attr(actual, 'ALL') vs attr(expected, 'ALL')
prMF prMFCOrg PrCMFEgivenD count
attr(actual, 'ALL')[1, ] 0.2401 0.2401 0.2401 234
- attr(actual, 'ALL')[2, ] 0.2058 0.1029 0.1029 112
+ attr(expected, 'ALL')[2, ] 0.2058 0.1029 0.1029 120
- attr(actual, 'ALL')[3, ] 0.2058 0.1029 0.1029 84
+ attr(expected, 'ALL')[3, ] 0.2058 0.1029 0.1029 102
- attr(actual, 'ALL')[4, ] 0.2058 0.1029 0.1029 102
+ attr(expected, 'ALL')[4, ] 0.2058 0.1029 0.1029 84
- attr(actual, 'ALL')[5, ] 0.2058 0.1029 0.1029 120
+ attr(expected, 'ALL')[5, ] 0.2058 0.1029 0.1029 112
- attr(actual, 'ALL')[6, ] 0.0441 0.0441 0.0441 37
+ attr(expected, 'ALL')[6, ] 0.0441 0.0441 0.0441 52
- attr(actual, 'ALL')[7, ] 0.0441 0.0441 0.0441 42
+ attr(expected, 'ALL')[7, ] 0.0441 0.0441 0.0441 40
- attr(actual, 'ALL')[8, ] 0.1764 0.0441 0.0441 35
+ attr(expected, 'ALL')[8, ] 0.1764 0.0441 0.0441 37
- attr(actual, 'ALL')[9, ] 0.1764 0.0441 0.0441 46
+ attr(expected, 'ALL')[9, ] 0.1764 0.0441 0.0441 35
- attr(actual, 'ALL')[10, ] 0.1764 0.0441 0.0441 52
+ attr(expected, 'ALL')[10, ] 0.1764 0.0441 0.0441 46
and 4 more ...
attr(actual, 'ALL')$prMF | attr(expected, 'ALL')$prMF
[1] 0.240099999999999980 | 0.240099999999999980 [1]
[2] 0.205800000000000011 - 0.205799999999999983 [2]
[3] 0.205800000000000011 - 0.205799999999999983 [3]
[4] 0.205800000000000011 - 0.205799999999999983 [4]
[5] 0.205800000000000011 - 0.205799999999999983 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.176400000000000029 - 0.176399999999999973 [8]
[9] 0.176400000000000029 - 0.176399999999999973 [9]
[10] 0.176400000000000029 - 0.176399999999999973 [10]
... ... ... and 4 more ...
attr(actual, 'ALL')$prMFCOrg[1:14] vs attr(expected, 'ALL')$prMFCOrg[1:14]
0.240099999999999980
- 0.102900000000000005
+ 0.102899999999999991
- 0.102900000000000005
+ 0.102899999999999991
- 0.102900000000000005
+ 0.102899999999999991
- 0.102900000000000005
+ 0.102899999999999991
0.044100000000000000
0.044100000000000000
- 0.044100000000000007
+ 0.044099999999999993
- 0.044100000000000007
+ 0.044099999999999993
- 0.044100000000000007
+ 0.044099999999999993
and 4 more ...
attr(actual, 'ALL')$PrCMFEgivenD vs attr(expected, 'ALL')$PrCMFEgivenD
- 0.2400999999999999801
+ 0.2401000000000000079
0.1029000000000000054
0.1029000000000000054
0.1029000000000000054
0.1029000000000000054
- 0.0441000000000000003
+ 0.0441000000000000072
- 0.0441000000000000003
+ 0.0441000000000000072
- 0.0441000000000000072
+ 0.0441000000000000003
- 0.0441000000000000072
+ 0.0441000000000000003
- 0.0441000000000000072
+ 0.0441000000000000003
and 6 more ...
attr(actual, 'ALL')$count | attr(expected, 'ALL')$count
[1] 234 | 234 [1]
[2] 112 - 120 [2]
[3] 84 - 102 [3]
[4] 102 - 84 [4]
[5] 120 - 112 [5]
[6] 37 - 52 [6]
[7] 42 - 40 [7]
[8] 35 - 37 [8]
[9] 46 - 35 [9]
[10] 52 - 46 [10]
... ... ... and 4 more ...
actual vs expected
count
actual[1, ] 234
- actual[2, ] 112
+ expected[2, ] 120
- actual[3, ] 84
+ expected[3, ] 102
- actual[4, ] 102
+ expected[4, ] 84
- actual[5, ] 120
+ expected[5, ] 112
- actual[6, ] 37
+ expected[6, ] 52
- actual[7, ] 42
+ expected[7, ] 40
- actual[8, ] 35
+ expected[8, ] 37
- actual[9, ] 98
+ expected[9, ] 81
- actual[10, ] 40
+ expected[10, ] 42
and 3 more ...
`actual$count[1:13]`: 234 112 84 102 120 37 42 35 98 40 and 3 more...
`expected$count[1:13]`: 234 120 102 84 112 52 40 37 81 42 ...
[ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ]
Error:
! Test failures.
Execution halted
ERROR
r-oldrel-windows-x86_64
tests
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(TriLLIEM)
>
> test_check("TriLLIEM")
Saving _problems/test-fullview-3.R
Saving _problems/test-simulate-3.R
[ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ]
══ Skipped tests (10) ══════════════════════════════════════════════════════════
• On CRAN (10): 'test-TriLLIEM.R:1:1', 'test-TriLLIEM.R:6:1',
'test-anova.TriLLIEM.R:1:1', 'test-anova.TriLLIEM.R:7:1',
'test-fullview.R:6:1', 'test-simulate.R:6:1', 'test-simulate.R:18:1',
'test-summary.TriLLIEM.R:1:1', 'test-summary.TriLLIEM.R:6:1',
'test-summary.TriLLIEM.R:36:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-fullview.R:3:3'): expected example_dat4R ─────────────────────
Expected `fullview(simulateData())` to be identical to `fullview(example_dat4R)`.
Differences:
actual vs expected
prMF prMFCOrg PrCMFEgivenD count
actual[1, ] 0.2401 0.2401 0.2401 234
- actual[2, ] 0.2058 0.1029 0.1029 112
+ expected[2, ] 0.2058 0.1029 0.1029 120
- actual[3, ] 0.2058 0.1029 0.1029 84
+ expected[3, ] 0.2058 0.1029 0.1029 102
- actual[4, ] 0.2058 0.1029 0.1029 102
+ expected[4, ] 0.2058 0.1029 0.1029 84
- actual[5, ] 0.2058 0.1029 0.1029 120
+ expected[5, ] 0.2058 0.1029 0.1029 112
- actual[6, ] 0.0441 0.0441 0.0441 37
+ expected[6, ] 0.0441 0.0441 0.0441 52
- actual[7, ] 0.0441 0.0441 0.0441 42
+ expected[7, ] 0.0441 0.0441 0.0441 40
- actual[8, ] 0.1764 0.0441 0.0441 35
+ expected[8, ] 0.1764 0.0441 0.0441 37
- actual[9, ] 0.1764 0.0441 0.0441 46
+ expected[9, ] 0.1764 0.0441 0.0441 35
- actual[10, ] 0.1764 0.0441 0.0441 52
+ expected[10, ] 0.1764 0.0441 0.0441 46
and 4 more ...
actual$prMF | expected$prMF
[1] 0.240099999999999980 | 0.240099999999999980 [1]
[2] 0.205800000000000011 - 0.205799999999999983 [2]
[3] 0.205800000000000011 - 0.205799999999999983 [3]
[4] 0.205800000000000011 - 0.205799999999999983 [4]
[5] 0.205800000000000011 - 0.205799999999999983 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.176400000000000029 - 0.176399999999999973 [8]
[9] 0.176400000000000029 - 0.176399999999999973 [9]
[10] 0.176400000000000029 - 0.176399999999999973 [10]
... ... ... and 4 more ...
actual$prMFCOrg | expected$prMFCOrg
[1] 0.240099999999999980 | 0.240099999999999980 [1]
[2] 0.102900000000000005 - 0.102899999999999991 [2]
[3] 0.102900000000000005 - 0.102899999999999991 [3]
[4] 0.102900000000000005 - 0.102899999999999991 [4]
[5] 0.102900000000000005 - 0.102899999999999991 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.044100000000000007 - 0.044099999999999993 [8]
[9] 0.044100000000000007 - 0.044099999999999993 [9]
[10] 0.044100000000000007 - 0.044099999999999993 [10]
... ... ... and 4 more ...
actual$PrCMFEgivenD | expected$PrCMFEgivenD
[1] 0.2400999999999999801 - 0.2401000000000000079 [1]
[2] 0.1029000000000000054 | 0.1029000000000000054 [2]
[3] 0.1029000000000000054 | 0.1029000000000000054 [3]
[4] 0.1029000000000000054 | 0.1029000000000000054 [4]
[5] 0.1029000000000000054 | 0.1029000000000000054 [5]
[6] 0.0441000000000000003 - 0.0441000000000000072 [6]
[7] 0.0441000000000000003 - 0.0441000000000000072 [7]
[8] 0.0441000000000000072 - 0.0441000000000000003 [8]
[9] 0.0441000000000000072 - 0.0441000000000000003 [9]
[10] 0.0441000000000000072 - 0.0441000000000000003 [10]
... ... ... and 6 more ...
`actual$count[1:14]`: 234 112 84 102 120 37 42 35 46 52 and 4 more...
`expected$count[1:14]`: 234 120 102 84 112 52 40 37 35 46 ...
── Failure ('test-simulate.R:3:3'): expected example_dat4R ─────────────────────
Expected `simulateData()` to be identical to `example_dat4R`.
Differences:
attr(actual, 'ALL') vs attr(expected, 'ALL')
prMF prMFCOrg PrCMFEgivenD count
attr(actual, 'ALL')[1, ] 0.2401 0.2401 0.2401 234
- attr(actual, 'ALL')[2, ] 0.2058 0.1029 0.1029 112
+ attr(expected, 'ALL')[2, ] 0.2058 0.1029 0.1029 120
- attr(actual, 'ALL')[3, ] 0.2058 0.1029 0.1029 84
+ attr(expected, 'ALL')[3, ] 0.2058 0.1029 0.1029 102
- attr(actual, 'ALL')[4, ] 0.2058 0.1029 0.1029 102
+ attr(expected, 'ALL')[4, ] 0.2058 0.1029 0.1029 84
- attr(actual, 'ALL')[5, ] 0.2058 0.1029 0.1029 120
+ attr(expected, 'ALL')[5, ] 0.2058 0.1029 0.1029 112
- attr(actual, 'ALL')[6, ] 0.0441 0.0441 0.0441 37
+ attr(expected, 'ALL')[6, ] 0.0441 0.0441 0.0441 52
- attr(actual, 'ALL')[7, ] 0.0441 0.0441 0.0441 42
+ attr(expected, 'ALL')[7, ] 0.0441 0.0441 0.0441 40
- attr(actual, 'ALL')[8, ] 0.1764 0.0441 0.0441 35
+ attr(expected, 'ALL')[8, ] 0.1764 0.0441 0.0441 37
- attr(actual, 'ALL')[9, ] 0.1764 0.0441 0.0441 46
+ attr(expected, 'ALL')[9, ] 0.1764 0.0441 0.0441 35
- attr(actual, 'ALL')[10, ] 0.1764 0.0441 0.0441 52
+ attr(expected, 'ALL')[10, ] 0.1764 0.0441 0.0441 46
and 4 more ...
attr(actual, 'ALL')$prMF | attr(expected, 'ALL')$prMF
[1] 0.240099999999999980 | 0.240099999999999980 [1]
[2] 0.205800000000000011 - 0.205799999999999983 [2]
[3] 0.205800000000000011 - 0.205799999999999983 [3]
[4] 0.205800000000000011 - 0.205799999999999983 [4]
[5] 0.205800000000000011 - 0.205799999999999983 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.176400000000000029 - 0.176399999999999973 [8]
[9] 0.176400000000000029 - 0.176399999999999973 [9]
[10] 0.176400000000000029 - 0.176399999999999973 [10]
... ... ... and 4 more ...
attr(actual, 'ALL')$prMFCOrg[1:14] vs attr(expected, 'ALL')$prMFCOrg[1:14]
0.240099999999999980
- 0.102900000000000005
+ 0.102899999999999991
- 0.102900000000000005
+ 0.102899999999999991
- 0.102900000000000005
+ 0.102899999999999991
- 0.102900000000000005
+ 0.102899999999999991
0.044100000000000000
0.044100000000000000
- 0.044100000000000007
+ 0.044099999999999993
- 0.044100000000000007
+ 0.044099999999999993
- 0.044100000000000007
+ 0.044099999999999993
and 4 more ...
attr(actual, 'ALL')$PrCMFEgivenD vs attr(expected, 'ALL')$PrCMFEgivenD
- 0.2400999999999999801
+ 0.2401000000000000079
0.1029000000000000054
0.1029000000000000054
0.1029000000000000054
0.1029000000000000054
- 0.0441000000000000003
+ 0.0441000000000000072
- 0.0441000000000000003
+ 0.0441000000000000072
- 0.0441000000000000072
+ 0.0441000000000000003
- 0.0441000000000000072
+ 0.0441000000000000003
- 0.0441000000000000072
+ 0.0441000000000000003
and 6 more ...
attr(actual, 'ALL')$count | attr(expected, 'ALL')$count
[1] 234 | 234 [1]
[2] 112 - 120 [2]
[3] 84 - 102 [3]
[4] 102 - 84 [4]
[5] 120 - 112 [5]
[6] 37 - 52 [6]
[7] 42 - 40 [7]
[8] 35 - 37 [8]
[9] 46 - 35 [9]
[10] 52 - 46 [10]
... ... ... and 4 more ...
actual vs expected
count
actual[1, ] 234
- actual[2, ] 112
+ expected[2, ] 120
- actual[3, ] 84
+ expected[3, ] 102
- actual[4, ] 102
+ expected[4, ] 84
- actual[5, ] 120
+ expected[5, ] 112
- actual[6, ] 37
+ expected[6, ] 52
- actual[7, ] 42
+ expected[7, ] 40
- actual[8, ] 35
+ expected[8, ] 37
- actual[9, ] 98
+ expected[9, ] 81
- actual[10, ] 40
+ expected[10, ] 42
and 3 more ...
`actual$count[1:13]`: 234 112 84 102 120 37 42 35 98 40 and 3 more...
`expected$count[1:13]`: 234 120 102 84 112 52 40 37 81 42 ...
[ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ]
Error:
! Test failures.
Execution halted
OK
r-release-linux-x86_64
*
ERROR
r-release-macos-arm64
tests
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(TriLLIEM)
>
> test_check("TriLLIEM")
Saving _problems/test-fullview-3.R
Saving _problems/test-simulate-3.R
[ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ]
══ Skipped tests (10) ══════════════════════════════════════════════════════════
• On CRAN (10): 'test-TriLLIEM.R:1:1', 'test-TriLLIEM.R:6:1',
'test-anova.TriLLIEM.R:1:1', 'test-anova.TriLLIEM.R:7:1',
'test-fullview.R:6:1', 'test-simulate.R:6:1', 'test-simulate.R:18:1',
'test-summary.TriLLIEM.R:1:1', 'test-summary.TriLLIEM.R:6:1',
'test-summary.TriLLIEM.R:36:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-fullview.R:3:3'): expected example_dat4R ─────────────────────
Expected `fullview(simulateData())` to be identical to `fullview(example_dat4R)`.
Differences:
actual$prMF | expected$prMF
[1] 0.240100000000000036 - 0.240099999999999980 [1]
[2] 0.205800000000000011 - 0.205799999999999983 [2]
[3] 0.205800000000000011 - 0.205799999999999983 [3]
[4] 0.205800000000000011 - 0.205799999999999983 [4]
[5] 0.205800000000000011 - 0.205799999999999983 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.176399999999999973 | 0.176399999999999973 [8]
actual$prMFCOrg | expected$prMFCOrg
[1] 0.240100000000000036 - 0.240099999999999980 [1]
[2] 0.102900000000000005 - 0.102899999999999991 [2]
[3] 0.102900000000000005 - 0.102899999999999991 [3]
[4] 0.102900000000000005 - 0.102899999999999991 [4]
[5] 0.102900000000000005 - 0.102899999999999991 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.044099999999999993 | 0.044099999999999993 [8]
actual$PrCMFEgivenD | expected$PrCMFEgivenD
[1] 0.2400999999999999246 - 0.2401000000000000079 [1]
[2] 0.1028999999999999637 - 0.1029000000000000054 [2]
[3] 0.1028999999999999637 - 0.1029000000000000054 [3]
[4] 0.1028999999999999637 - 0.1029000000000000054 [4]
[5] 0.1028999999999999637 - 0.1029000000000000054 [5]
[6] 0.0440999999999999795 - 0.0441000000000000072 [6]
[7] 0.0440999999999999795 - 0.0441000000000000072 [7]
[8] 0.0440999999999999726 - 0.0441000000000000003 [8]
[9] 0.0440999999999999726 - 0.0441000000000000003 [9]
[10] 0.0440999999999999726 - 0.0441000000000000003 [10]
... ... ... and 6 more ...
── Failure ('test-simulate.R:3:3'): expected example_dat4R ─────────────────────
Expected `simulateData()` to be identical to `example_dat4R`.
Differences:
attr(actual, 'ALL')$prMF | attr(expected, 'ALL')$prMF
[1] 0.240100000000000036 - 0.240099999999999980 [1]
[2] 0.205800000000000011 - 0.205799999999999983 [2]
[3] 0.205800000000000011 - 0.205799999999999983 [3]
[4] 0.205800000000000011 - 0.205799999999999983 [4]
[5] 0.205800000000000011 - 0.205799999999999983 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.176399999999999973 | 0.176399999999999973 [8]
attr(actual, 'ALL')$prMFCOrg | attr(expected, 'ALL')$prMFCOrg
[1] 0.240100000000000036 - 0.240099999999999980 [1]
[2] 0.102900000000000005 - 0.102899999999999991 [2]
[3] 0.102900000000000005 - 0.102899999999999991 [3]
[4] 0.102900000000000005 - 0.102899999999999991 [4]
[5] 0.102900000000000005 - 0.102899999999999991 [5]
[6] 0.044100000000000000 | 0.044100000000000000 [6]
[7] 0.044100000000000000 | 0.044100000000000000 [7]
[8] 0.044099999999999993 | 0.044099999999999993 [8]
attr(actual, 'ALL')$PrCMFEgivenD vs attr(expected, 'ALL')$PrCMFEgivenD
- 0.2400999999999999246
+ 0.2401000000000000079
- 0.1028999999999999637
+ 0.1029000000000000054
- 0.1028999999999999637
+ 0.1029000000000000054
- 0.1028999999999999637
+ 0.1029000000000000054
- 0.1028999999999999637
+ 0.1029000000000000054
- 0.0440999999999999795
+ 0.0441000000000000072
- 0.0440999999999999795
+ 0.0441000000000000072
- 0.0440999999999999726
+ 0.0441000000000000003
- 0.0440999999999999726
+ 0.0441000000000000003
- 0.0440999999999999726
+ 0.0441000000000000003
and 6 more ...
[ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ]
Error:
! Test failures.
Execution halted
OK
r-release-macos-x86_64
*
Check History
ERROR 6 OK · 0 NOTE · 0 WARNING · 5 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-devel-macos-arm64
tests
Running ‘testthat.R’ [3s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(Tr
ERROR
r-release-macos-arm64
tests
Running ‘testthat.R’ [3s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(Tr
ERROR
r-oldrel-macos-arm64
tests
Running ‘testthat.R’ [3s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(Tr
ERROR
r-oldrel-macos-x86_64
tests
Running ‘testthat.R’ [9s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(T
ERROR
r-oldrel-windows-x86_64
tests
Running 'testthat.R' [16s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(TriL
Dependency Network
Version History
new
0.1.0
Mar 9, 2026