SpaDES.core
Core Utilities for Developing and Running Spatially Explicit Discrete Event Models
Description
Provides the core framework for a discrete event system to implement a complete data-to-decisions, reproducible workflow. The core components facilitate the development of modular pieces, and enable the user to include additional functionality by running user-built modules. Includes conditional scheduling, restart after interruption, packaging of reusable modules, tools for developing arbitrary automated workflows, automated interweaving of modules of different temporal resolution, and tools for visualizing and understanding the within-project dependencies. The suggested package 'NLMR' can be installed from the repository (<https://PredictiveEcology.r-universe.dev>).
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Check details (17 non-OK)
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examples
Running examples in ‘SpaDES.core-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: outputs
> ### Title: Simulation outputs
> ### Aliases: outputs outputs,simList-method outputs<-
> ### outputs<-,simList-method registerOutputs outputArgs
> ### outputArgs,simList-method outputArgs<- outputArgs<-,simList-method
>
> ### ** Examples
>
> #######################
> # outputs
> #######################
>
> tmpdir <- file.path(tempdir(), "outputs") |> checkPath(create = TRUE)
> tmpFile <- file.path(tmpdir, "temp.rds")
> tempObj <- 1:10
>
> # Can add data.frame of outputs directly into simInit call
> sim <- simInit(objects = c("tempObj"),
+ outputs = data.frame(objectName = "tempObj"),
+ paths = list(outputPath = tmpdir))
Setting:
options(
spades.outputPath = '/tmp/RtmplGG8pY/outputs'
)
Paths set to:
options(
rasterTmpDir = '/tmp/RtmplGG8pY/SpaDES/scratch/raster'
reproducible.cachePath = '/tmp/RtmplGG8pY/myProject/cache'
spades.inputPath = '/tmp/RtmplGG8pY/myProject/inputs'
spades.outputPath = '/tmp/RtmplGG8pY/outputs'
spades.modulePath = '/tmp/RtmplGG8pY/myProject/modules'
spades.scratchPath = '/tmp/RtmplGG8pY/SpaDES/scratch'
)
terra::terraOptions(tempdir = '/tmp/RtmplGG8pY/SpaDES/scratch/terra')
Mar08 14:34:55 simInit Using setDTthreads(1). To change: 'options(spades.DTthreads = X)'.
Error in basename(x) : a character vector argument expected
Calls: simInit ... <Anonymous> -> ifelse -> grepl -> is.factor -> basename
Elapsed time for simInit: 0.08081722 secs
Execution halted
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installed package size
installed size is 7.3Mb
sub-directories of 1Mb or more:
R 5.6Mb
package dependencies
Packages suggested but not available for checking: 'NLMR', 'SpaDES.tools'
installed package size
installed size is 7.7Mb
sub-directories of 1Mb or more:
R 6.0Mb
package dependencies
Package suggested but not available for checking: ‘NLMR’
installed package size
installed size is 6.8Mb
sub-directories of 1Mb or more:
R 5.1Mb
package dependencies
Package suggested but not available for checking: 'NLMR'
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Check History
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
examples
Running examples in ‘SpaDES.core-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: outputs
> ### Title: Simulation outputs
> ### Aliases: outputs outputs,simList-method outputs<-
> ### outputs<-,simList-method registerOutputs outputArgs
> ### outputArgs,simList-method outputArgs<- outputArgs<-,simList-method
>
> ### ** Examples
>
> #######################
> # outputs
> #######################
>
> tmpdir <- file.path(temp
package dependencies
Packages suggested but not available for checking: 'NLMR', 'SpaDES.tools'
package dependencies
Package suggested but not available for checking: ‘NLMR’
package dependencies
Package suggested but not available for checking: 'NLMR'