Description
Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.
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CRAN Check Status
5
NOTE
9
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (15 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Matthew Daniel Young <my4@sanger.ac.uk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Matthew", "Daniel"),
family = "Young",
role = c("aut", "cre"),
email = "my4@sanger.ac.uk")
as necessary.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Matthew Daniel Young <my4@sanger.ac.uk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Matthew", "Daniel"),
family = "Young",
role = c("aut", "cre"),
email = "my4@sanger.ac.uk")
as necessary.
OK
r-devel-linux-x86_64-fedora-clang
*
OK
r-devel-linux-x86_64-fedora-gcc
*
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 6.7Mb
sub-directories of 1Mb or more:
data 4.9Mb
doc 1.0Mb
NOTE
r-oldrel-macos-arm64
package dependencies
Package suggested but not available for checking: ‘DropletUtils’
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 6.7Mb
sub-directories of 1Mb or more:
data 4.9Mb
doc 1.0Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 3.9Mb
doc 1.0Mb
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Matthew Daniel Young <my4@sanger.ac.uk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Matthew", "Daniel"),
family = "Young",
role = c("aut", "cre"),
email = "my4@sanger.ac.uk")
as necessary.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Matthew Daniel Young <my4@sanger.ac.uk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Matthew", "Daniel"),
family = "Young",
role = c("aut", "cre"),
email = "my4@sanger.ac.uk")
as necessary.
NOTE
r-oldrel-macos-arm64
package dependencies
Package suggested but not available for checking: ‘DropletUtils’
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 6.7Mb
sub-directories of 1Mb or more:
data 4.9Mb
doc 1.0Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 3.9Mb
doc 1.0Mb
Reverse Dependencies (1)
suggests
Dependency Network
Version History
new
1.6.2
Mar 9, 2026