SUMO
Generating Multi-Omics Datasets for Testing and Benchmarking
Description
Provides tools to simulate multi-omics datasets with predefined signal structures. The generated data can be used for testing, validating, and benchmarking integrative analysis methods such as factor models and clustering approaches. This version includes enhanced signal customization, visualization tools (scatter, histogram, 3D), MOFA-based analysis pipelines, PowerPoint export, and statistical profiling of datasets. Designed for both method development and teaching, SUMO supports real and synthetic data pipelines with interpretable outputs. Tini, Giulia, et al (2019) <doi:10.1093/bib/bbx167>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (17 non-OK)
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dependencies in R code
Namespaces in Imports field not imported from: ‘data.table’ ‘grid’ ‘tidyverse’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘data.table’ ‘grid’ ‘tidyverse’ All declared Imports should be used.
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installed package size
installed size is 9.6Mb
sub-directories of 1Mb or more:
extdata 9.3Mb
package dependencies
Packages suggested but not available for checking: 'MOFAdata', 'MOFA2'
installed package size
installed size is 9.6Mb
sub-directories of 1Mb or more:
extdata 9.3Mb
package dependencies
Packages suggested but not available for checking: 'MOFAdata', 'MOFA2', 'basilisk'
installed package size
installed size is 9.6Mb
sub-directories of 1Mb or more:
extdata 9.3Mb
package dependencies
Package suggested but not available for checking: 'MOFAdata'
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Check History
NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘data.table’ ‘grid’ ‘tidyverse’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘data.table’ ‘grid’ ‘tidyverse’ All declared Imports should be used.
package dependencies
Packages suggested but not available for checking: 'MOFAdata', 'MOFA2'
package dependencies
Packages suggested but not available for checking: 'MOFAdata', 'MOFA2', 'basilisk'
package dependencies
Package suggested but not available for checking: 'MOFAdata'