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SPAS

Stratified-Petersen Analysis System

v2025.2.1 · Feb 5, 2025 · GPL (>= 2)

Description

The Stratified-Petersen Analysis System (SPAS) is designed to estimate abundance in two-sample capture-recapture experiments where the capture and recaptures are stratified. This is a generalization of the simple Lincoln-Petersen estimator. Strata may be defined in time or in space or both, and the s strata in which marking takes place may differ from the t strata in which recoveries take place. When s=t, SPAS reduces to the method described by Darroch (1961) <doi:10.2307/2332748>. When s<t, SPAS implements the methods described in Plante, Rivest, and Tremblay (1988) <doi:10.2307/2533994>. Schwarz and Taylor (1998) <doi:10.1139/f97-238> describe the use of SPAS in estimating return of salmon stratified by time and geography. A related package, BTSPAS, deals with temporal stratification where a spline is used to model the distribution of the population over time as it passes the second capture location. This is the R-version of the (now obsolete) standalone Windows program of the same name.

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3 NOTE
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

installed package size

  installed size is 47.7Mb
  sub-directories of 1Mb or more:
    libs  46.9Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 47.0Mb
  sub-directories of 1Mb or more:
    libs  46.3Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is 13.4Mb
  sub-directories of 1Mb or more:
    libs  12.6Mb
OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 47.7Mb
  sub-directories of 1Mb or more:
    libs  46.9Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 47.0Mb
  sub-directories of 1Mb or more:
    libs  46.3Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is 13.4Mb
  sub-directories of 1Mb or more:
    libs  12.6Mb

Reverse Dependencies (1)

imports

Dependency Network

Dependencies Reverse dependencies checkmate MASS Matrix msm numDeriv plyr reshape2 TMB Petersen SPAS

Version History

new 2025.2.1 Mar 9, 2026