SMITIDstruct
Data Structure and Manipulations Tool for Host and Viral Population
v0.0.5
·
Jun 14, 2019
·
GPL (>= 2) | file LICENSE
Description
Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID). It allow sequence-space-time host and viral population data storage, indexation and querying.
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1
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6
NOTE
7
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Package required but not available: ‘Biostrings’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE
r-devel-linux-x86_64-debian-gcc
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-devel-linux-x86_64-fedora-clang
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-devel-linux-x86_64-fedora-gcc
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
NOTE
r-oldrel-macos-arm64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-macos-x86_64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-windows-x86_64
LazyData
'LazyData' is specified without a 'data' directory
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
ERROR 7 OK · 6 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Package required but not available: ‘Biostrings’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE
r-devel-linux-x86_64-debian-gcc
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-devel-linux-x86_64-fedora-clang
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-devel-linux-x86_64-fedora-gcc
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-oldrel-macos-arm64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-macos-x86_64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-windows-x86_64
LazyData
'LazyData' is specified without a 'data' directory
Dependency Network
Version History
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0.0.5
Mar 10, 2026