SIRmcmc
Compartmental Susceptible-Infectious-Recovered (SIR) Model of Community and Household Infection
Description
We build an Susceptible-Infectious-Recovered (SIR) model where the rate of infection is the sum of the household rate and the community rate. We estimate the posterior distribution of the parameters using the Metropolis algorithm. Further details may be found in: F Scott Dahlgren, Ivo M Foppa, Melissa S Stockwell, Celibell Y Vargas, Philip LaRussa, Carrie Reed (2021) "Household transmission of influenza A and B within a prospective cohort during the 2013-2014 and 2014-2015 seasons" <doi:10.1002/sim.9181>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘F Scott Dahlgren <fdahlgr@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("F", "Scott"),
family = "Dahlgren",
role = c("aut", "cre"),
email = "fdahlgr@gmail.com"),
person(given = c("Ivo", "M"),
family = "Foppa",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘F Scott Dahlgren <fdahlgr@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("F", "Scott"),
family = "Dahlgren",
role = c("aut", "cre"),
email = "fdahlgr@gmail.com"),
person(given = c("Ivo", "M"),
family = "Foppa",
role = "aut"))
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘F Scott Dahlgren <fdahlgr@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("F", "Scott"),
family = "Dahlgren",
role = c("aut", "cre"),
email = "fdahlgr@gmail.com"),
person(given = c("Ivo", "M"),
family = "Foppa",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘F Scott Dahlgren <fdahlgr@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("F", "Scott"),
family = "Dahlgren",
role = c("aut", "cre"),
email = "fdahlgr@gmail.com"),
person(given = c("Ivo", "M"),
family = "Foppa",
role = "aut"))
as necessary.