SCdeconR
Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference
v1.0.0
·
Mar 22, 2024
·
GPL (>= 3)
Description
Streamlined workflow from deconvolution of bulk RNA-seq data to downstream differential expression and gene-set enrichment analysis. Provide various visualization functions.
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CRAN Check Status
1
ERROR
1
NOTE
12
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Package required but not available: ‘glmGamPoi’ Packages suggested but not available for checking: 'DESeq2', 'scater', 'scran', 'SingleCellExperiment' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK
r-devel-linux-x86_64-debian-gcc
*
OK
r-devel-linux-x86_64-fedora-clang
*
OK
r-devel-linux-x86_64-fedora-gcc
*
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
OK
r-oldrel-macos-arm64
*
NOTE
r-oldrel-macos-x86_64
package dependencies
Package suggested but not available for checking: ‘Linnorm’
OK
r-oldrel-windows-x86_64
*
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Additional Issues
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Check History
ERROR 12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Package required but not available: ‘glmGamPoi’ Packages suggested but not available for checking: 'DESeq2', 'scater', 'scran', 'SingleCellExperiment' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE
r-oldrel-macos-x86_64
package dependencies
Package suggested but not available for checking: ‘Linnorm’
Dependency Network
Version History
new
1.0.0
Mar 9, 2026