Rduckhts

'DuckDB' High Throughput Sequencing File Formats Reader Extension

v0.1.3-0.0.2 · Feb 24, 2026 · GPL-3

Description

Bundles the 'duckhts' 'DuckDB' extension for reading High Throughput Sequencing file formats with 'DuckDB'. The 'DuckDB' C extension API <https://duckdb.org/docs/stable/clients/c/api> and its 'htslib' dependency are compiled from vendored sources during package installation. James K Bonfield and co-authors (2021) <doi:10.1093/gigascience/giab007>.

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CRAN Check Status

3 NOTE

11 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	157.4s
r-devel-linux-x86_64-debian-gcc	OK	139s
r-devel-linux-x86_64-fedora-clang	OK	196.9s
r-devel-linux-x86_64-fedora-gcc	OK	399.8s
r-devel-macos-arm64	OK	48s
r-devel-windows-x86_64	OK	239s
r-oldrel-macos-arm64	NOTE	43s
r-oldrel-macos-x86_64	NOTE	209s
r-oldrel-windows-x86_64	NOTE	279s
r-patched-linux-x86_64	OK	189.1s
r-release-linux-x86_64	OK	181s
r-release-macos-arm64	OK	38s
r-release-macos-x86_64	OK	211s
r-release-windows-x86_64	OK	253s

Check details (15 non-OK)

OK r-devel-linux-x86_64-debian-clang

OK r-devel-linux-x86_64-debian-gcc

OK r-devel-linux-x86_64-fedora-clang

OK r-devel-linux-x86_64-fedora-gcc

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

NOTE r-oldrel-macos-arm64

installed package size

  installed size is 10.0Mb
  sub-directories of 1Mb or more:
    duckhts_extension   8.1Mb
    extdata             1.7Mb

NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 11.1Mb
  sub-directories of 1Mb or more:
    duckhts_extension   9.2Mb
    extdata             1.7Mb

NOTE r-oldrel-windows-x86_64

for GNU extensions in Makefiles

GNU make is a SystemRequirements.

NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  5.4Mb
  sub-directories of 1Mb or more:
    duckhts_extension   3.5Mb
    extdata             1.7Mb

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

OK r-release-macos-arm64

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-oldrel-macos-arm64

installed package size

  installed size is 10.0Mb
  sub-directories of 1Mb or more:
    duckhts_extension   8.1Mb
    extdata             1.7Mb

NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 11.1Mb
  sub-directories of 1Mb or more:
    duckhts_extension   9.2Mb
    extdata             1.7Mb

NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  5.4Mb
  sub-directories of 1Mb or more:
    duckhts_extension   3.5Mb
    extdata             1.7Mb

Dependency Network

Version History

new 0.1.3-0.0.2 Mar 10, 2026