RGCCA
Regularized and Sparse Generalized Canonical Correlation Analysis for Multiblock Data
v3.0.3
·
Dec 11, 2023
·
GPL-3
Description
Multi-block data analysis concerns the analysis of several sets of variables (blocks) observed on the same group of individuals. The main aims of the RGCCA package are: to study the relationships between blocks and to identify subsets of variables of each block which are active in their relationships with the other blocks. This package allows to (i) run R/SGCCA and related methods, (ii) help the user to find out the optimal parameters for R/SGCCA such as regularization parameters (tau or sparsity), (iii) evaluate the stability of the RGCCA results and their significance, (iv) build predictive models from the R/SGCCA. (v) Generic print() and plot() functions apply to all these functionalities.
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CRAN Check Status
1
ERROR
13
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | ERROR |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
OK
r-devel-linux-x86_64-debian-clang
*
OK
r-devel-linux-x86_64-debian-gcc
*
OK
r-devel-linux-x86_64-fedora-clang
*
OK
r-devel-linux-x86_64-fedora-gcc
*
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
OK
r-oldrel-macos-arm64
*
OK
r-oldrel-macos-x86_64
*
OK
r-oldrel-windows-x86_64
*
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
ERROR
r-release-macos-x86_64
tests
Running ‘testthat.R’ [28s/42s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(RGCCA)
>
> test_check("RGCCA")
[ FAIL 1 | WARN 0 | SKIP 49 | PASS 862 ]
══ Skipped tests (49) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test_print_call.R:11:3', 'test_print_call.R:24:3',
'test_print_comp.R:10:3', 'test_print_comp.R:19:3', 'test_print_comp.R:28:3',
'test_print_comp.R:37:3'
• as.logical(Sys.getenv("TEST_SNAPSHOTS")) is not TRUE (42):
'test_plot.rgcca.r:27:3', 'test_plot.rgcca.r:36:3', 'test_plot.rgcca.r:47:3',
'test_plot.rgcca.r:55:3', 'test_plot.rgcca.r:65:3', 'test_plot.rgcca.r:72:3',
'test_plot.rgcca.r:79:3', 'test_plot.rgcca.r:86:3', 'test_plot.rgcca.r:93:3',
'test_plot.rgcca.r:100:3', 'test_plot.rgcca.r:109:3',
'test_plot.rgcca_bootstrap.R:30:3', 'test_plot.rgcca_bootstrap.R:37:3',
'test_plot.rgcca_cv.R:22:3', 'test_plot.rgcca_cv.R:29:3',
'test_plot.rgcca_cv.R:36:3', 'test_plot.rgcca_permutation.r:23:3',
'test_plot.rgcca_permutation.r:30:3', 'test_plot.rgcca_permutation.r:38:3',
'test_plot.rgcca_permutation.r:49:3', 'test_plot.rgcca_stability.R:16:3',
'test_print.rgcca.R:10:3', 'test_print.rgcca.R:19:3',
'test_print.rgcca_bootstrap.R:13:3', 'test_print.rgcca_cv.R:17:3',
'test_print.rgcca_cv.R:30:3', 'test_print.rgcca_permutation.R:17:3',
'test_print.rgcca_stability.R:13:3', 'test_summary.rgcca.r:11:3',
'test_summary.rgcca.r:20:3', 'test_summary.rgcca.r:30:3',
'test_summary.rgcca.r:39:3', 'test_summary.rgcca.r:49:3',
'test_summary.rgcca_bootstrap.r:12:3', 'test_summary.rgcca_bootstrap.r:21:3',
'test_summary.rgcca_cv.R:17:3', 'test_summary.rgcca_cv.R:30:3',
'test_summary.rgcca_cv.R:43:3', 'test_summary.rgcca_cv.R:56:3',
'test_summary.rgcca_permutation.R:12:3',
'test_summary.rgcca_permutation.R:24:3',
'test_summary.rgcca_stability.R:13:3'
• {gliomaData} is not installed (1): 'test_rgcca_predict.r:54:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_rgcca.R:203:1'): (code run outside of `test_that()`) ───────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'FactoMineR'
Backtrace:
▆
1. └─base::loadNamespace(x) at test_rgcca.R:203:1
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 1 | WARN 0 | SKIP 49 | PASS 862 ]
Error: Test failures
Execution halted
OK
r-release-windows-x86_64
*
Check History
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-release-macos-x86_64
tests
Running ‘testthat.R’ [28s/42s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(RGCCA)
>
> test_check("RGCCA")
[ FAIL 1 | WARN 0 | SKIP 49 | PASS 862 ]
══ Skipped tests (49) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test_print_call.R:11:3', 'test_print_call.R:24:3',
'test_print_comp.R:10:3', 'test_print_comp.R:19:3', 'test_print_comp.R:28:3',
'test_print_comp.R:37:3'
• as.logical(Sys.gete
Reverse Dependencies (2)
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Version History
new
3.0.3
Mar 9, 2026