Qploidy
Estimation of Ploidy and Detection of Aneuploidy Using Genotyping Data
v1.0.1
·
May 1, 2025
·
AGPL (>= 3)
Description
Provides functions for estimating ploidy levels and detecting aneuploidy in individuals using allele intensities or allele count data from high-throughput genotyping platforms, including single nucleotide polymorphism (SNP) arrays and sequencing-based technologies. Implements an extended version of the 'PennCNV' signal standardization method by Wang et al. (2007) <doi:10.1101/gr.6861907> for higher ploidy levels. Computes B-allele frequencies (BAF), z-scores, and identifies copy number variation patterns.
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| r-devel-windows-x86_64 | OK |
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| r-release-linux-x86_64 | OK |
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| r-release-windows-x86_64 | OK |
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OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
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1.0.1
Mar 10, 2026