PACVr
Plastome Assembly Coverage Visualization
v1.0.11
·
Apr 9, 2024
·
BSD 3-clause License + file LICENSE
Description
Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | WARNING |
| r-devel-linux-x86_64-fedora-clang | WARNING |
| r-devel-linux-x86_64-fedora-gcc | WARNING |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Packages required but not available: 'Biostrings', 'GenomicAlignments' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
WARNING
r-devel-linux-x86_64-debian-gcc
dependencies in R code
Missing or unexported objects: ‘Biostrings::compareStrings’ ‘Biostrings::nucleotideSubstitutionMatrix’ ‘Biostrings::pairwiseAlignment’
WARNING
r-devel-linux-x86_64-fedora-clang
dependencies in R code
Missing or unexported objects: ‘Biostrings::compareStrings’ ‘Biostrings::nucleotideSubstitutionMatrix’ ‘Biostrings::pairwiseAlignment’
WARNING
r-devel-linux-x86_64-fedora-gcc
dependencies in R code
Missing or unexported objects: ‘Biostrings::compareStrings’ ‘Biostrings::nucleotideSubstitutionMatrix’ ‘Biostrings::pairwiseAlignment’
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
OK
r-oldrel-macos-arm64
*
OK
r-oldrel-macos-x86_64
*
OK
r-oldrel-windows-x86_64
*
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
ERROR 10 OK · 0 NOTE · 3 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Packages required but not available: 'Biostrings', 'GenomicAlignments' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
WARNING
r-devel-linux-x86_64-debian-gcc
dependencies in R code
Missing or unexported objects: ‘Biostrings::compareStrings’ ‘Biostrings::nucleotideSubstitutionMatrix’ ‘Biostrings::pairwiseAlignment’
WARNING
r-devel-linux-x86_64-fedora-clang
dependencies in R code
Missing or unexported objects: ‘Biostrings::compareStrings’ ‘Biostrings::nucleotideSubstitutionMatrix’ ‘Biostrings::pairwiseAlignment’
WARNING
r-devel-linux-x86_64-fedora-gcc
dependencies in R code
Missing or unexported objects: ‘Biostrings::compareStrings’ ‘Biostrings::nucleotideSubstitutionMatrix’ ‘Biostrings::pairwiseAlignment’
Dependency Network
Version History
new
1.0.11
Mar 9, 2026