OpEnHiMR

0.1.1

Optimization Based Ensemble Model for Prediction of Histone Modifications in Rice

0packages depend

6.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Dipro SinhaFirst published 2024-05-262 releasesCRAN page ↗

The comprehensive knowledge of epigenetic modifications in plants, encompassing histone modifications in regulating gene expression, is not completely ingrained. It is noteworthy that histone deacetylation and histone H3 lysine 27 trimethylation (H3K27me3) play a role in repressing transcription in eukaryotes. In contrast, histone acetylation (H3K9ac) and H3K4me3 have been inevitably linked to the stimulation of gene expression, which significantly influences plant development and plays a role in plant responses to biotic and abiotic stresses. To our knowledge this the first multiclass classifier for predicting histone modification in plants. doi:10.1186/s12864-019-5489-4.

Install

R (CRAN)Ubuntu (r2u)

install.packages("OpEnHiMR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-openhimr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 7.3 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 100%

Downloads

6.1K

CRAN downloads in the past year

Rank #6,968 · ~17/day · ~508/mo

Releases R versions

Daily download trend is not available in this view yet.

32030 days

1.5K90 days

6.1K1 year

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Also on93 r2u

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (16)

Biostrings devtools tidyverse seqinr splitstackshape entropy party e1071 caret randomForest gbmstatsstringr ftrCOOL dplyr RCurl

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 449 (95%)Rd 24 (5%)

Code characteristics

Cyclomatic complexity: 35.0 median / 35 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

1 0 exported

Complexity

35 avg / 35 max

Call network

1 nodes / 0 edges

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (10)

Maintainer (1)

Dipro Sinha

Author, Maintainer

Authors (10)

Dipro Sinha

Author, Maintainer

Sunil Archak

Author

Sougata Bhattacharjee

Author

Neeraj Budhlakoti

Author

Saikath Das

Author

Girish Kumar Jha

Author

Dwijesh Chandra Mishra

Author

Sneha Murmu

Author

Sudhir Srivastava

Author

Md Yeasin

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.1Latest
2024-05-30 · current release · diff ↗
0.1.0
2024-05-26
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-05-26
Total releases: 2 / 2 yrs
License: GPL-3 OSI
Download size: 6.4 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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