OmnibusFisher

A Modified Fisher’s Method to Test Overall Gene-Level Effect

v1.0 · Dec 19, 2018 · GPL (>= 2)

Description

The separate p-values of SNPs, RNA expressions and DNA methylations are calculated by KM regression. The correlation between different omics data are taken into account. This method can be applied to either samples with all three types of omics data or samples with two types.

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	83s
r-devel-linux-x86_64-debian-gcc	NOTE	58.5s
r-devel-linux-x86_64-fedora-clang	OK	128.2s
r-devel-linux-x86_64-fedora-gcc	OK	133.7s
r-devel-macos-arm64	OK	22s
r-devel-windows-x86_64	OK	88s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	61s
r-oldrel-windows-x86_64	OK	114s
r-patched-linux-x86_64	OK	78.7s
r-release-linux-x86_64	OK	77.9s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	81s
r-release-windows-x86_64	OK	86s

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NOTE r-devel-linux-x86_64-debian-clang

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Maintainer: ‘Qi Yan <qiy17@pitt.edu>’

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NOTE r-devel-linux-x86_64-debian-gcc

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Maintainer: ‘Qi Yan <qiy17@pitt.edu>’

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                    email = "qiy17@pitt.edu")
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NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Qi Yan <qiy17@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qi",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "qiy17@pitt.edu")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Qi Yan <qiy17@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qi",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "qiy17@pitt.edu")
as necessary.

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Version History

new 1.0 Mar 9, 2026