NetworkExtinction
Extinction Simulation in Ecological Networks
v1.0.3
·
Mar 31, 2023
·
GPL (>= 2)
Description
Simulates the extinction of species in ecological networks and it analyzes its cascading effects, described in Dunne et al. (2002) <doi:10.1073/pnas.192407699>.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (14 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
|
Dependency Network
Version History
new
1.0.3
Mar 9, 2026