NameNeedle
Using Needleman-Wunsch to Match Sample Names
v1.2.8
·
Apr 8, 2025
·
Apache License (== 2.0)
Description
The Needleman-Wunsch global alignment algorithm can be used to find approximate matches between sample names in different data sets. See Wang et al. (2010) <doi:10.4137/CIN.S5613>.
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CRAN Check Status
3
WARNING
11
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | WARNING |
| r-devel-linux-x86_64-fedora-clang | WARNING |
| r-devel-linux-x86_64-fedora-gcc | WARNING |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
OK
r-devel-linux-x86_64-debian-clang
*
WARNING
r-devel-linux-x86_64-debian-gcc
Rd cross-references
Missing link(s) in Rd file 'needles.Rd':
‘[Biostrings]{pairwiseAlignment}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
WARNING
r-devel-linux-x86_64-fedora-clang
Rd cross-references
Missing link(s) in Rd file 'needles.Rd':
‘[Biostrings]{pairwiseAlignment}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
WARNING
r-devel-linux-x86_64-fedora-gcc
Rd cross-references
Missing link(s) in Rd file 'needles.Rd':
‘[Biostrings]{pairwiseAlignment}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
OK
r-oldrel-macos-arm64
*
OK
r-oldrel-macos-x86_64
*
OK
r-oldrel-windows-x86_64
*
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
WARNING 11 OK · 0 NOTE · 3 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
WARNING
r-devel-linux-x86_64-debian-gcc
Rd cross-references
Missing link(s) in Rd file 'needles.Rd':
‘[Biostrings]{pairwiseAlignment}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
WARNING
r-devel-linux-x86_64-fedora-clang
Rd cross-references
Missing link(s) in Rd file 'needles.Rd':
‘[Biostrings]{pairwiseAlignment}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
WARNING
r-devel-linux-x86_64-fedora-gcc
Rd cross-references
Missing link(s) in Rd file 'needles.Rd':
‘[Biostrings]{pairwiseAlignment}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
Reverse Dependencies (1)
imports
Dependency Network
Version History
new
1.2.8
Mar 9, 2026