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NCutYX

Clustering of Omics Data of Multiple Types with a Multilayer Network Representation

v0.1.0 · Feb 9, 2018 · GPL-3
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Description

Omics data come in different forms: gene expression, methylation, copy number, protein measurements and more. 'NCutYX' allows clustering of variables, of samples, and both variables and samples (biclustering), while incorporating the dependencies across multiple types of Omics data. (SJ Teran Hidalgo et al (2017), <doi:10.1186/s12864-017-3990-1>).

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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Sebastian J. Teran Hidalgo <sebastianteranhidalgo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sebastian", "J.", "Teran"),
                      family = "Hidalgo",
                      role = c("aut", "cre"),
                      email = "sebastianteranhidalgo@gmail.com"),
               person(given = "Shuangge",
                      family = "Ma",
                      role = "aut"),
               person(given = "Ruofan",
                      family = "Bie",
                      role = "aut"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: sebastianteranhidalgo@gmail.com
    From: man/ancut.Rd
  URI: sebastianteranhidalgo@gmail.com
    From: man/awncut.Rd
  URI: sebastianteranhidalgo@gmail.com
    From: man/ncut.Rd
  URI: commits/master
    From: README.md
  URI: /commits/master
    From: README.md
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Sebastian J. Teran Hidalgo <sebastianteranhidalgo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sebastian", "J.", "Teran"),
                      family = "Hidalgo",
                      role = c("aut", "cre"),
                      email = "sebastianteranhidalgo@gmail.com"),
               person(given = "Shuangge",
                      family = "Ma",
                      role = "aut"),
               person(given = "Ruofan",
                      family = "Bie",
                      role = "aut"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: sebastianteranhidalgo@gmail.com
    From: man/ancut.Rd
  URI: sebastianteranhidalgo@gmail.com
    From: man/awncut.Rd
  URI: sebastianteranhidalgo@gmail.com
    From: man/ncut.Rd
  URI: commits/master
    From: README.md
  URI: /commits/master
    From: README.md
NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespaces in Imports field not imported from:
  ‘MASS’ ‘fields’ ‘mvtnorm’
  All declared Imports should be used.
NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespaces in Imports field not imported from:
  ‘MASS’ ‘fields’ ‘mvtnorm’
  All declared Imports should be used.
OK r-devel-macos-arm64

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                OK
                r-devel-windows-x86_64
              

              
*

              

            

            

              

                NOTE
                r-oldrel-macos-arm64
              

              
installed package size

              
  installed size is  6.8Mb
  sub-directories of 1Mb or more:
    data   1.5Mb
    libs   4.4Mb

            

            

              

                NOTE
                r-oldrel-macos-x86_64
              

              
installed package size

              
  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data   1.5Mb
    libs   4.4Mb

            

            

              

                OK
                r-oldrel-windows-x86_64
              

              
*

              

            

            

              

                OK
                r-patched-linux-x86_64
              

              
*

              

            

            

              

                OK
                r-release-linux-x86_64
              

              
*

              

            

            

              

                OK
                r-release-macos-arm64
              

              
*

              

            

            

              

                OK
                r-release-macos-x86_64
              

              
*

              

            

            

              

                OK
                r-release-windows-x86_64
              

              
*

              

            

          

        

      



      

      
      

        
Check History

        

          

            
              NOTE
              
                8 OK ·                 6 NOTE ·                 0 WARNING ·                 0 ERROR ·                 0 FAILURE              
              Mar 9, 2026
            
            

              

                

                  NOTE
                  r-devel-linux-x86_64-debian-clang
                

                
CRAN incoming feasibility

                
Maintainer: ‘Sebastian J. Teran Hidalgo <sebastianteranhidalgo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sebastian", "J.", "Teran"),
                      family = "Hidalgo",
                      role = c("aut", "cre"),
                      email = "sebastianteranhidalgo@gmail.com"),
               person(given = "Shuangge",
                      family = "Ma",
                      role = "aut"),
               person(given = "R

              

              

                

                  NOTE
                  r-devel-linux-x86_64-debian-gcc
                

                
CRAN incoming feasibility

                
Maintainer: ‘Sebastian J. Teran Hidalgo <sebastianteranhidalgo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sebastian", "J.", "Teran"),
                      family = "Hidalgo",
                      role = c("aut", "cre"),
                      email = "sebastianteranhidalgo@gmail.com"),
               person(given = "Shuangge",
                      family = "Ma",
                      role = "aut"),
               person(given = "R

              

              

                

                  NOTE
                  r-devel-linux-x86_64-fedora-clang
                

                
dependencies in R code

                
Namespaces in Imports field not imported from:
  ‘MASS’ ‘fields’ ‘mvtnorm’
  All declared Imports should be used.

              

              

                

                  NOTE
                  r-devel-linux-x86_64-fedora-gcc
                

                
dependencies in R code

                
Namespaces in Imports field not imported from:
  ‘MASS’ ‘fields’ ‘mvtnorm’
  All declared Imports should be used.

              

              

                

                  NOTE
                  r-oldrel-macos-arm64
                

                
installed package size

                
  installed size is  6.8Mb
  sub-directories of 1Mb or more:
    data   1.5Mb
    libs   4.4Mb

              

              

                

                  NOTE
                  r-oldrel-macos-x86_64
                

                
installed package size

                
  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data   1.5Mb
    libs   4.4Mb

              

            

          

        

      


      

      
      

        
Dependency Network

        

          
            

            
            
            Dependencies
            
            Reverse dependencies

            
            
            
            
            
            

            

            
            
              
              Rcpp
            
            
              
              glmnet
            
            
              
              MASS
            
            
              
              mvtnorm
            
            
              
              fields
            

            

            
            
            NCutYX
          
        

      


      
      

        
Version History

        

          

            new
            0.1.0
            Mar 9, 2026