MetaRVM
Meta-Population Compartmental Model for Respiratory Virus Diseases
v1.0.1
·
Jan 9, 2026
·
MIT + file LICENSE
Description
Simulates respiratory virus epidemics using meta-population compartmental models following Fadikar et. al. (2025) <doi:10.1101/2025.05.05.25327021>. 'MetaRVM' implements a stochastic SEIRD (Susceptible-Exposed-Infected-Recovered-Dead) framework with demographic stratification by age, race, and geographic zones. It supports complex epidemiological scenarios including asymptomatic and presymptomatic transmission, hospitalization dynamics, vaccination schedules, and time-varying contact patterns via mixing matrices.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | ERROR |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
OK
r-devel-linux-x86_64-debian-clang
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OK
r-devel-linux-x86_64-debian-gcc
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OK
r-devel-linux-x86_64-fedora-clang
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OK
r-devel-linux-x86_64-fedora-gcc
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OK
r-devel-macos-arm64
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OK
r-devel-windows-x86_64
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OK
r-oldrel-macos-arm64
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OK
r-oldrel-macos-x86_64
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ERROR
r-oldrel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'checkpointing.Rmd' using rmarkdown File figure/plot-1.png not found in resource path Error: processing vignette 'checkpointing.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building 'checkpointing.Rmd' --- re-building 'getting-started.Rmd' using rmarkdown --- finished re-building 'getting-started.Rmd' --- re-building 'running-a-simulation.Rmd' using rmarkdown --- finished re-building 'running-a-simulation.Rmd' --- re-building 'yaml-configuration.Rmd' using rmarkdown --- finished re-building 'yaml-configuration.Rmd' SUMMARY: processing the following file failed: 'checkpointing.Rmd' Error: Vignette re-building failed. Execution halted
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
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OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-oldrel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'checkpointing.Rmd' using rmarkdown File figure/plot-1.png not found in resource path Error: processing vignette 'checkpointing.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building 'checkpointing.Rmd' --- re-building 'getting-started.Rmd' using rmarkdown --- finished re-building 'getting-started.Rmd' --- re-building 'running-a-simulation.Rmd' using rmarkdown --- finished re-building 'running-a-si
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1.0.1
Mar 9, 2026