MVR
Mean-Variance Regularization
v1.33.0
·
Sep 10, 2018
·
GPL (>= 3) | file LICENSE
Description
This is a non-parametric method for joint adaptive mean-variance regularization and variance stabilization of high-dimensional data. It is suited for handling difficult problems posed by high-dimensional multivariate datasets (p >> n paradigm). Among those are that the variance is often a function of the mean, variable-specific estimators of variances are not reliable, and tests statistics have low powers due to a lack of degrees of freedom. Key features include: (i) Normalization and/or variance stabilization of the data, (ii) Computation of mean-variance-regularized t-statistics (F-statistics to follow), (iii) Generation of diverse diagnostic plots, (iv) Computationally efficient implementation using C/C++ interfacing and an option for parallel computing to enjoy a faster and easier experience in the R environment.
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Check details (16 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Jean-Eudes Dazard <jean-eudes.dazard@case.edu>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following (possibly) invalid file URIs:
URI: jean-eudes.dazard@case.edu
From: README.md
URI: huaxu77@gmail.com
From: README.md
URI: ahs4@case.edu
From: README.md
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
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108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
| ^
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109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
| ^
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110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
| ^
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111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
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112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
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114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
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116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
| ^
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117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:31: Lost braces; missing escapes or markup?
31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:32: Lost braces; missing escapes or markup?
32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Jean-Eudes Dazard <jean-eudes.dazard@case.edu>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following (possibly) invalid file URIs:
URI: jean-eudes.dazard@case.edu
From: README.md
URI: huaxu77@gmail.com
From: README.md
URI: ahs4@case.edu
From: README.md
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
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108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
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109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
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110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
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111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
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112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
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114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
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116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
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117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
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31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
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r-devel-linux-x86_64-fedora-clang
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checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
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108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
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109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
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110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
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111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
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112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
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114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
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116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
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117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
| ^
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31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
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r-devel-linux-x86_64-fedora-gcc
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checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
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108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
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109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
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110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
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111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
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112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
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114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
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116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
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117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
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31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
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r-devel-macos-arm64
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checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
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108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
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109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
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110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
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111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
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112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
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114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
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116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
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117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
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31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
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35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
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108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
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109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
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110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
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111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
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112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
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114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
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116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
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117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
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31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
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35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
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108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
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109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
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110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
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111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
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112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
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114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
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116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
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117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
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31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
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35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
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108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
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109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
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110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
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111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
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112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
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114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
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116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
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117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
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31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
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checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
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36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
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108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
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109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
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110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
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111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
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112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
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114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
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checkRd: (-1) mvr.Rd:115: Escaped LaTeX specials: \#
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116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
| ^
checkRd: (-1) mvr.Rd:117: Lost braces
117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:31: Lost braces; missing escapes or markup?
31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:32: Lost braces; missing escapes or markup?
32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
checkRd: (-1) mvr.Rd:108: Lost braces
108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
| ^
checkRd: (-1) mvr.Rd:109: Lost braces
109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
| ^
checkRd: (-1) mvr.Rd:110: Lost braces
110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
| ^
checkRd: (-1) mvr.Rd:111: Lost braces
111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
| ^
checkRd: (-1) mvr.Rd:112-113: Lost braces
112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
| ^
checkRd: (-1) mvr.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:114-115: Lost braces
114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
| ^
checkRd: (-1) mvr.Rd:115: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:116: Lost braces
116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
| ^
checkRd: (-1) mvr.Rd:117: Lost braces
117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:31: Lost braces; missing escapes or markup?
31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:32: Lost braces; missing escapes or markup?
32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
checkRd: (-1) mvr.Rd:108: Lost braces
108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
| ^
checkRd: (-1) mvr.Rd:109: Lost braces
109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
| ^
checkRd: (-1) mvr.Rd:110: Lost braces
110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
| ^
checkRd: (-1) mvr.Rd:111: Lost braces
111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
| ^
checkRd: (-1) mvr.Rd:112-113: Lost braces
112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
| ^
checkRd: (-1) mvr.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:114-115: Lost braces
114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
| ^
checkRd: (-1) mvr.Rd:115: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:116: Lost braces
116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
| ^
checkRd: (-1) mvr.Rd:117: Lost braces
117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:31: Lost braces; missing escapes or markup?
31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:32: Lost braces; missing escapes or markup?
32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
checkRd: (-1) mvr.Rd:108: Lost braces
108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
| ^
checkRd: (-1) mvr.Rd:109: Lost braces
109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
| ^
checkRd: (-1) mvr.Rd:110: Lost braces
110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
| ^
checkRd: (-1) mvr.Rd:111: Lost braces
111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
| ^
checkRd: (-1) mvr.Rd:112-113: Lost braces
112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
| ^
checkRd: (-1) mvr.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:114-115: Lost braces
114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
| ^
checkRd: (-1) mvr.Rd:115: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:116: Lost braces
116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
| ^
checkRd: (-1) mvr.Rd:117: Lost braces
117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:31: Lost braces; missing escapes or markup?
31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:32: Lost braces; missing escapes or markup?
32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
checkRd: (-1) mvr.Rd:108: Lost braces
108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
| ^
checkRd: (-1) mvr.Rd:109: Lost braces
109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
| ^
checkRd: (-1) mvr.Rd:110: Lost braces
110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
| ^
checkRd: (-1) mvr.Rd:111: Lost braces
111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
| ^
checkRd: (-1) mvr.Rd:112-113: Lost braces
112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
| ^
checkRd: (-1) mvr.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:114-115: Lost braces
114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
| ^
checkRd: (-1) mvr.Rd:115: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:116: Lost braces
116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
| ^
checkRd: (-1) mvr.Rd:117: Lost braces
117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:31: Lost braces; missing escapes or markup?
31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:32: Lost braces; missing escapes or markup?
32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
checkRd: (-1) mvr.Rd:108: Lost braces
108 | \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
| ^
checkRd: (-1) mvr.Rd:109: Lost braces
109 | \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
| ^
checkRd: (-1) mvr.Rd:110: Lost braces
110 | \item gap {\code{numeric} \code{vector} of the similarity statistic values}
| ^
checkRd: (-1) mvr.Rd:111: Lost braces
111 | \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
| ^
checkRd: (-1) mvr.Rd:112-113: Lost braces
112 | \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows),
| ^
checkRd: (-1) mvr.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:114-115: Lost braces
114 | \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
| ^
checkRd: (-1) mvr.Rd:115: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:116: Lost braces
116 | \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
| ^
checkRd: (-1) mvr.Rd:117: Lost braces
117 | \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:31: Lost braces; missing escapes or markup?
31 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) stabilization.diagnostic.Rd:32: Lost braces; missing escapes or markup?
32 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
| ^
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Jean-Eudes Dazard <jean-eudes.dazard@case.edu>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following (possibly) invalid file URIs:
URI: jean-eudes.dazard@case.edu
From: README.md
URI: huaxu77@gmail.com
From: README.md
URI: ahs4@case.edu
From: README.md
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Jean-Eudes Dazard <jean-eudes.dazard@case.edu>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following (possibly) invalid file URIs:
URI: jean-eudes.dazard@case.edu
From: README.md
URI: huaxu77@gmail.com
From: README.md
URI: ahs4@case.edu
From: README.md
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
35 | Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
| ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
36 | \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()}
Dependency Network
Version History
new
1.33.0
Mar 10, 2026