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MAGEE

Mixed Model Association Test for GEne-Environment Interaction

v1.4.5 · Feb 12, 2026 · GPL (>= 3)
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Description

Use a 'glmmkin' class object (GMMAT package) from the null model to perform generalized linear mixed model-based single-variant and variant set main effect tests, gene-environment interaction tests, and joint tests for association, as proposed in Wang et al. (2020) <DOI:10.1002/gepi.22351>.

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3 NOTE
11 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (15 non-OK)
OK r-devel-linux-x86_64-debian-clang

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installed package size

              
  installed size is  6.6Mb
  sub-directories of 1Mb or more:
    libs   4.8Mb

            

            

              

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package dependencies

              
Packages suggested but not available for checking:
  'SeqArray', 'SeqVarTools'

            

            

              

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                r-oldrel-macos-x86_64
              

              
installed package size

              
  installed size is  6.8Mb
  sub-directories of 1Mb or more:
    libs   4.9Mb

            

            

              

                NOTE
                r-oldrel-windows-x86_64
              

              
package dependencies

              
Package suggested but not available for checking: 'doMC'

            

            

              

                OK
                r-patched-linux-x86_64
              

              
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                r-release-linux-x86_64
              

              
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Check History

        

          

            
              NOTE
              
                11 OK ·                 3 NOTE ·                 0 WARNING ·                 0 ERROR ·                 0 FAILURE              
              Mar 9, 2026
            
            

              

                

                  NOTE
                  r-oldrel-macos-arm64
                

                
package dependencies

                
Packages suggested but not available for checking:
  'SeqArray', 'SeqVarTools'

              

              

                

                  NOTE
                  r-oldrel-macos-x86_64
                

                
installed package size

                
  installed size is  6.8Mb
  sub-directories of 1Mb or more:
    libs   4.9Mb

              

              

                

                  NOTE
                  r-oldrel-windows-x86_64
                

                
package dependencies

                
Package suggested but not available for checking: 'doMC'

              

            

          

        

      


      

      
      

        
Dependency Network

        

          
            

            
            
            Dependencies
            
            Reverse dependencies

            
            
            
            
            
            
            
            

            

            
            
              
              Rcpp
            
            
              
              Matrix
            
            
              
              MASS
            
            
              
              foreach
            
            
              
              GMMAT
            
            
              
              CompQuadForm
            
            
              
              data.table
            

            

            
            
            MAGEE
          
        

      


      
      

        
Version History

        

          

            new
            1.4.5
            Mar 9, 2026