LDATS

Latent Dirichlet Allocation Coupled with Time Series Analyses

v0.3.0 · Sep 19, 2023 · MIT + file LICENSE

Description

Combines Latent Dirichlet Allocation (LDA) and Bayesian multinomial time series methods in a two-stage analysis to quantify dynamics in high-dimensional temporal data. LDA decomposes multivariate data into lower-dimension latent groupings, whose relative proportions are modeled using generalized Bayesian time series models that include abrupt changepoints and smooth dynamics. The methods are described in Blei et al. (2003) <doi:10.1162/jmlr.2003.3.4-5.993>, Western and Kleykamp (2004) <doi:10.1093/pan/mph023>, Venables and Ripley (2002, ISBN-13:978-0387954578), and Christensen et al. (2018) <doi:10.1002/ecy.2373>.

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14 NOTE

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	162.9s
r-devel-linux-x86_64-debian-gcc	NOTE	109s
r-devel-linux-x86_64-fedora-clang	NOTE	238.3s
r-devel-linux-x86_64-fedora-gcc	NOTE	255s
r-devel-macos-arm64	NOTE	42s
r-devel-windows-x86_64	NOTE	195s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	111s
r-oldrel-windows-x86_64	NOTE	233s
r-patched-linux-x86_64	NOTE	151.6s
r-release-linux-x86_64	NOTE	148.4s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	144s
r-release-windows-x86_64	NOTE	195s

Check details (14 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-devel-linux-x86_64-debian-gcc

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-devel-linux-x86_64-fedora-clang

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-devel-linux-x86_64-fedora-gcc

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-devel-macos-arm64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-devel-windows-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-oldrel-macos-arm64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-oldrel-macos-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-oldrel-windows-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-patched-linux-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-release-linux-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-release-macos-arm64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-release-macos-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-release-windows-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-devel-linux-x86_64-debian-gcc

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-devel-linux-x86_64-fedora-clang

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-devel-linux-x86_64-fedora-gcc

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-devel-macos-arm64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-devel-windows-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-release-macos-arm64

Rd files

checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-release-macos-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
       |                                                        ^

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
       |                                                        ^
checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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Reverse Dependencies (1)

imports

argminCS

Dependency Network

Version History

new 0.3.0 Mar 9, 2026

Maintainer

Juniper L. Simonis

Dependencies

Depends

R (>= 3.5.0)

Imports

coda digest extraDistr graphics grDevices lubridate magrittr memoise methods mvtnorm nnet progress stats topicmodels viridis

Suggests

knitr pkgdown rmarkdown testthat vdiffr

Compilation

No compilation needed

First Published

Mar 9, 2026

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