IgAScores

Score Taxon-Level IgA Binding in IgA-Seq Experiments

v0.1.2 · Sep 1, 2020 · GPL-3

Description

Functions to calculate indices used to score immunoglobulin A (IgA) binding of bacteria in IgA sequencing (IgA-Seq) experiments. This includes the original Kau and Palm indices and more recent methods as described in Jackson et al. (2020) <doi:10.1101/2020.08.19.257501>. Additionally the package contains a function to simulate IgA-Seq data and an example experimental data set for method testing.

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CRAN Check Status

2 NOTE

12 OK

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	29.1s
r-devel-linux-x86_64-debian-gcc	NOTE	23.8s
r-devel-linux-x86_64-fedora-clang	OK	42.6s
r-devel-linux-x86_64-fedora-gcc	OK	59.4s
r-devel-macos-arm64	OK	16s
r-devel-windows-x86_64	OK	53s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	35s
r-oldrel-windows-x86_64	OK	56s
r-patched-linux-x86_64	OK	26.4s
r-release-linux-x86_64	OK	24.8s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	44s
r-release-windows-x86_64	OK	52s

Check details (2 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Matthew Jackson <mattjackson4@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Matthew Jackson <mattjackson4@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Matthew Jackson <mattjackson4@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Matthew Jackson <mattjackson4@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Version History

new 0.1.2 Mar 10, 2026