Hapi
Inference of Chromosome-Length Haplotypes Using Genomic Data of Single Gamete Cells
v0.0.3
·
Jul 28, 2018
·
GPL-3
Description
Inference of chromosome-length haplotypes using a few haploid gametes of an individual. The gamete genotype data may be generated from various platforms including genotyping arrays and sequencing even with low-coverage. Hapi simply takes genotype data of known hetSNPs in single gamete cells as input and report the high-resolution haplotypes as well as confidence of each phased hetSNPs. The package also includes a module allowing downstream analyses and visualization of identified crossovers in the gametes.
Downloads
162
Last 30 days
20128th
162
Last 90 days
162
Last year
CRAN Check Status
2
NOTE
12
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Ruidong Li <rli012@ucr.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Ruidong",
family = "Li",
role = c("aut", "cre"),
email = "rli012@ucr.edu"),
person(given = "Han",
family = "Qu",
role = "aut"),
person(given = "Jinfeng",
family = "Chen",
role = "aut"),
person(given = "Shibo",
family = "Wang",
role = "aut"),
person(family = "Le Zhang",
role = "aut"),
person(given = "Julong",
family = "Wei",
role = "aut"),
person(given = c("Sergio", "Pietro"),
family = "Ferrante",
role = "aut"),
person(given = c("Mikeal", "L."),
family = "Roose",
role = "aut"),
person(given = "Zhenyu",
family = "Jia",
role = "aut"))
as necessary.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Ruidong Li <rli012@ucr.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Ruidong",
family = "Li",
role = c("aut", "cre"),
email = "rli012@ucr.edu"),
person(given = "Han",
family = "Qu",
role = "aut"),
person(given = "Jinfeng",
family = "Chen",
role = "aut"),
person(given = "Shibo",
family = "Wang",
role = "aut"),
person(family = "Le Zhang",
role = "aut"),
person(given = "Julong",
family = "Wei",
role = "aut"),
person(given = c("Sergio", "Pietro"),
family = "Ferrante",
role = "aut"),
person(given = c("Mikeal", "L."),
family = "Roose",
role = "aut"),
person(given = "Zhenyu",
family = "Jia",
role = "aut"))
as necessary.
OK
r-devel-linux-x86_64-fedora-clang
*
OK
r-devel-linux-x86_64-fedora-gcc
*
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
OK
r-oldrel-macos-arm64
*
OK
r-oldrel-macos-x86_64
*
OK
r-oldrel-windows-x86_64
*
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Ruidong Li <rli012@ucr.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Ruidong",
family = "Li",
role = c("aut", "cre"),
email = "rli012@ucr.edu"),
person(given = "Han",
family = "Qu",
role = "aut"),
person(given = "Jinfeng",
family = "Chen",
role = "au
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Ruidong Li <rli012@ucr.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Ruidong",
family = "Li",
role = c("aut", "cre"),
email = "rli012@ucr.edu"),
person(given = "Han",
family = "Qu",
role = "aut"),
person(given = "Jinfeng",
family = "Chen",
role = "au
Dependency Network
Version History
new
0.0.3
Mar 10, 2026