GDILM.SEIRS
Spatial Modeling of Infectious Disease with Reinfection
v0.0.6
·
Feb 13, 2026
·
MIT + file LICENSE
Description
Geographically Dependent Individual Level Models (GDILMs) within the Susceptible-Exposed-Infectious-Recovered-Susceptible (SEIRS) framework are applied to model infectious disease transmission, incorporating reinfection dynamics. This package employs a likelihood based Monte Carlo Expectation Conditional Maximization (MCECM) algorithm for estimating model parameters. It also provides tools for GDILM fitting, parameter estimation, AIC calculation on real pandemic data, and simulation studies customized to user-defined model settings.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | ERROR |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
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r-devel-linux-x86_64-debian-clang
*
ERROR
r-devel-linux-x86_64-debian-gcc
tests
Running ‘testthat.R’ [58s/68s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(GDILM.SEIRS)
>
> test_check("GDILM.SEIRS")
Saving _problems/test-GDILM_SEIRS_Sim_Par_Est-2.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GDILM_SEIRS_Sim_Par_Est.R:2:3'): An example for a simulation study ──
Error in `solve.default(S40)`: system is computationally singular: reciprocal condition number = 4.43332e-17
Backtrace:
▆
1. └─GDILM.SEIRS::GDILM_SEIRS_Sim_Par_Est(...) at test-GDILM_SEIRS_Sim_Par_Est.R:2:3
2. └─GDILM.SEIRS (local) estfun(...)
3. ├─base::solve(S40)
4. └─base::solve.default(S40)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
Error:
! Test failures.
Execution halted
OK
r-devel-linux-x86_64-fedora-clang
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r-devel-macos-arm64
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r-devel-windows-x86_64
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r-oldrel-macos-arm64
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r-oldrel-macos-x86_64
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r-oldrel-windows-x86_64
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r-release-linux-x86_64
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r-release-macos-arm64
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r-release-windows-x86_64
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ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
tests
Running ‘testthat.R’ [58s/68s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(
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0.0.6
Mar 9, 2026