GALLO
Genomic Annotation in Livestock for Positional Candidate LOci
Description
The accurate annotation of genes and Quantitative Trait Loci (QTLs) located within candidate markers and/or regions (haplotypes, windows, CNVs, etc) is a crucial step the most common genomic analyses performed in livestock, such as Genome-Wide Association Studies or transcriptomics. The Genomic Annotation in Livestock for positional candidate LOci (GALLO) is an R package designed to provide an intuitive and straightforward environment to annotate positional candidate genes and QTLs from high-throughput genetic studies in livestock. Moreover, GALLO allows the graphical visualization of gene and QTL annotation results, data comparison among different grouping factors (e.g., methods, breeds, tissues, statistical models, studies, etc.), and QTL enrichment in different livestock species including cattle, pigs, sheep, and chicken, among others.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
package dependencies
Package required but not available: ‘rtracklayer’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
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installed package size
installed size is 5.0Mb
sub-directories of 1Mb or more:
data 1.9Mb
doc 2.5Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
data 2.6Mb
doc 2.5Mb
installed package size
installed size is 5.0Mb
sub-directories of 1Mb or more:
data 1.9Mb
doc 2.5Mb
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Check History
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
package dependencies
Package required but not available: ‘rtracklayer’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
installed package size
installed size is 5.0Mb
sub-directories of 1Mb or more:
data 1.9Mb
doc 2.5Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
data 2.6Mb
doc 2.5Mb
installed package size
installed size is 5.0Mb
sub-directories of 1Mb or more:
data 1.9Mb
doc 2.5Mb