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EHR

Electronic Health Record (EHR) Data Processing and Analysis Tool

v0.4-11 · Dec 19, 2022 · GPL (>= 3)

Description

Process and analyze electronic health record (EHR) data. The 'EHR' package provides modules to perform diverse medication-related studies using data from EHR databases. Especially, the package includes modules to perform pharmacokinetic/pharmacodynamic (PK/PD) analyses using EHRs, as outlined in Choi, Beck, McNeer, Weeks, Williams, James, Niu, Abou-Khalil, Birdwell, Roden, Stein, Bejan, Denny, and Van Driest (2020) <doi:10.1002/cpt.1787>. Additional modules will be added in future. In addition, this package provides various functions useful to perform Phenome Wide Association Study (PheWAS) to explore associations between drug exposure and phenotypes obtained from EHR data, as outlined in Choi, Carroll, Beck, Mosley, Roden, Denny, and Van Driest (2018) <doi:10.1093/bioinformatics/bty306>.

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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 NOTE
r-devel-windows-x86_64 NOTE
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 NOTE
r-release-macos-arm64 NOTE
r-release-macos-x86_64 NOTE
r-release-windows-x86_64 NOTE
Check details (14 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-release-macos-arm64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^
NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct flow data
       |     ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
    25 | code{concData_mod}: correct concentration data
       |     ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
    27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
       |     ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
    30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
       |     ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
    32 | code{writeCheckData}
       |     ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
    34 | code{processErx}: prepare e-prescription data
       |     ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
    36 | code{processErxAddl}: additional processing, checking for connected observations
       |     ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
    38 | code{validateColumns}: check columns are in place
       |     ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
    40 | code{read}: generic read function
       |     ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
    42 | code{setDoseMar}: set unit/rate/date columns
       |     ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
    19 | code{takeClosest}: take value at nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
    22 | code{takeClosestTime}: find nearest time
       |     ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
    24 | code{daysDiff}: number of days between two dates
       |     ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
    26 | code{minDiff}: difference (in minutes) of time vector
       |     ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
    28 | code{fixDates}: add leading zeroes to date
       |     ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
    30 | code{joinFlowMar}: rbind two data sets
       |     ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
    32 | code{updateInterval_mod}: replace maxint with difference between surgery time
       |     ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
    35 | code{fix_serum_time}: create time variable
       |     ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
    37 | code{merge_by_time}: impute in x by closest time in y
       |     ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
    39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
       |     ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
    41 | code{addZeroDose}: add rows of zero dose, after a gap
       |     ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
    43 | code{pkdata}
       |     ^

Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-release-macos-arm64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl
NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) build_lastdose.Rd:10: Lost braces
    10 | code{build_lastdose}: build PK oral with lastdose information
       |     ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
    18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
       |     ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
    21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
       |     ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
    23 | code{flowData_mod}: correct fl

Dependency Network

Dependencies Reverse dependencies data.table lubridate pkdata EHR

Version History

new 0.4-11 Mar 9, 2026