DiPALM

Differential Pattern Analysis via Linear Modeling

v1.2 · Jun 27, 2022 · GPL (>= 2)

Description

Individual gene expression patterns are encoded into a series of eigenvector patterns ('WGCNA' package). Using the framework of linear model-based differential expression comparisons ('limma' package), time-course expression patterns for genes in different conditions are compared and analyzed for significant pattern changes. For reference, see: Greenham K, Sartor RC, Zorich S, Lou P, Mockler TC and McClung CR. eLife. 2020 Sep 30;9(4). <doi:10.7554/eLife.58993>.

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r-devel-linux-x86_64-debian-gcc	NOTE	82.7s
r-devel-linux-x86_64-fedora-clang	OK	190.5s
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r-devel-macos-arm64	OK	60s
r-devel-windows-x86_64	OK	128s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	172s
r-oldrel-windows-x86_64	OK	166s
r-patched-linux-x86_64	OK	115.4s
r-release-linux-x86_64	OK	112.3s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	210s
r-release-windows-x86_64	OK	125s

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NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Ryan C. Sartor <sartorry@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ryan", "C."),
                      family = "Sartor",
                      role = c("aut", "cre"),
                      email = "sartorry@gmail.com"),
               person(given = "Kathleen",
                      family = "Greenham",
                      role = "aut",
                      email = "greenham@umn.edu"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Ryan C. Sartor <sartorry@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ryan", "C."),
                      family = "Sartor",
                      role = c("aut", "cre"),
                      email = "sartorry@gmail.com"),
               person(given = "Kathleen",
                      family = "Greenham",
                      role = "aut",
                      email = "greenham@umn.edu"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

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OK r-devel-linux-x86_64-fedora-gcc

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

OK r-oldrel-macos-arm64

OK r-oldrel-macos-x86_64

OK r-oldrel-windows-x86_64

OK r-patched-linux-x86_64

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Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Ryan C. Sartor <sartorry@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ryan", "C."),
                      family = "Sartor",
                      role = c("aut", "cre"),
                      email = "sartorry@gmail.com"),
               person(given = "Kathleen",
                      family = "Greenham",
                      role = "aut",
                      email = "greenham@umn.edu"))
as necessary.

Package CITATI

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Ryan C. Sartor <sartorry@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ryan", "C."),
                      family = "Sartor",
                      role = c("aut", "cre"),
                      email = "sartorry@gmail.com"),
               person(given = "Kathleen",
                      family = "Greenham",
                      role = "aut",
                      email = "greenham@umn.edu"))
as necessary.

Package CITATI

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Version History

new 1.2 Mar 9, 2026