DGEobj.utils
Differential Gene Expression (DGE) Analysis Utility Toolkit
v1.0.6
·
May 19, 2022
·
GPL-3
Description
Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE) analysis (Law (2015) <doi:10.12688/f1000research.9005.3>). The tools include both analysis work-flow and utility functions: mapping/unit conversion, count normalization, accounting for unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that provides a flexible container to manage and annotate Differential Gene Expression analysis results.
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CRAN Check Status
14
NOTE
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (15 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-devel-linux-x86_64-debian-gcc
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-devel-linux-x86_64-fedora-clang
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-devel-linux-x86_64-fedora-gcc
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-devel-macos-arm64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-devel-windows-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-oldrel-macos-arm64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-oldrel-macos-arm64
package dependencies
Package suggested but not available for checking: ‘zFPKM’
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r-oldrel-macos-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-oldrel-windows-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-patched-linux-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-release-linux-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-release-macos-arm64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-release-macos-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-release-windows-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
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r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-devel-linux-x86_64-debian-gcc
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-devel-linux-x86_64-fedora-clang
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-devel-linux-x86_64-fedora-gcc
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-devel-macos-arm64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-devel-windows-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-patched-linux-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-release-linux-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-release-macos-arm64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-release-macos-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-release-windows-x86_64
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checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-oldrel-macos-arm64
package dependencies
Package suggested but not available for checking: ‘zFPKM’
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r-oldrel-macos-x86_64
Rd files
checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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r-oldrel-windows-x86_64
Rd files
checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
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Version History
new
1.0.6
Mar 9, 2026