CNVScope

A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization

v3.7.2 · Mar 30, 2022 · BSD_3_clause + file LICENSE

Description

Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.

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CRAN Check Status

1 ERROR

6 NOTE

7 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	ERROR	4s
r-devel-linux-x86_64-debian-gcc	NOTE	532.3s
r-devel-linux-x86_64-fedora-clang	NOTE	1274.9s
r-devel-linux-x86_64-fedora-gcc	NOTE	1218.5s
r-devel-macos-arm64	OK	191s
r-devel-windows-x86_64	OK	655s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	516s
r-oldrel-windows-x86_64	NOTE	879s
r-patched-linux-x86_64	OK	716s
r-release-linux-x86_64	OK	710.6s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	810s
r-release-windows-x86_64	OK	648s

Check details (17 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
               person(given = "Yonghong",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jack",
                      family = "Zhu",
                      role = "aut"),
               person(given = "Paul",
                      family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

ERROR r-devel-linux-x86_64-debian-clang

package dependencies

Packages required but not available:
  'GenomicInteractions', 'biomaRt', 'rtracklayer'

Packages suggested but not available for checking:
  'HiCseg', 'InteractionSet', 'GenomicFeatures',
  'BSgenome.Hsapiens.UCSC.hg19'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
               person(given = "Yonghong",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jack",
                      family = "Zhu",
                      role = "aut"),
               person(given = "Paul",
                      family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

NOTE r-oldrel-macos-arm64

installed package size

  installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc       3.2Mb
    extdata   1.7Mb

NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’

NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc       3.2Mb
    extdata   1.7Mb

NOTE r-oldrel-macos-x86_64

package dependencies

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’

NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc       3.2Mb
    extdata   1.7Mb

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

OK r-release-macos-arm64

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

ERROR 7 OK · 6 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026

ERROR r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
               person(given = "Yonghong",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jack",
                      family = "Zhu",
                      role = "aut"),
               person(given = "P

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
               person(given = "Yonghong",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jack",
                      family = "Zhu",
                      role = "aut"),
               person(given = "P

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’

NOTE r-oldrel-macos-x86_64

package dependencies

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’

NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc       3.2Mb
    extdata   1.7Mb

Dependency Network

Version History

new 3.7.2 Mar 9, 2026