AMISforInfectiousDiseases
Implement the AMIS Algorithm for Infectious Disease Models
v0.1.0
·
Jan 20, 2025
·
MIT + file LICENSE
Description
Implements the Adaptive Multiple Importance Sampling (AMIS) algorithm, as described by Retkute et al. (2021, <doi:10.1214/21-AOAS1486>), to estimate key epidemiological parameters by combining outputs from a geostatistical model of infectious diseases (such as prevalence, incidence, or relative risk) with a disease transmission model. Utilising the resulting posterior distributions, the package enables forward projections at the local level.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | ERROR |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
OK
r-devel-linux-x86_64-debian-clang
*
OK
r-devel-linux-x86_64-debian-gcc
*
OK
r-devel-linux-x86_64-fedora-clang
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OK
r-devel-linux-x86_64-fedora-gcc
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OK
r-devel-macos-arm64
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OK
r-devel-windows-x86_64
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OK
r-oldrel-macos-arm64
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OK
r-oldrel-macos-x86_64
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ERROR
r-oldrel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'ascariasis.Rmd' using rmarkdown File figure/asc_plot_mixt-1.png not found in resource path Error: processing vignette 'ascariasis.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building 'ascariasis.Rmd' --- re-building 'simulation_study.Rmd' using rmarkdown File figure/sim_plot_true_data-1.png not found in resource path Error: processing vignette 'simulation_study.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building 'simulation_study.Rmd' SUMMARY: processing the following files failed: 'ascariasis.Rmd' 'simulation_study.Rmd' Error: Vignette re-building failed. Execution halted
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-oldrel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'ascariasis.Rmd' using rmarkdown File figure/asc_plot_mixt-1.png not found in resource path Error: processing vignette 'ascariasis.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building 'ascariasis.Rmd' --- re-building 'simulation_study.Rmd' using rmarkdown File figure/sim_plot_true_data-1.png not found in resource path Error: processing vignette 'simulation_study.Rmd' failed with diagnostics: pando
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0.1.0
Mar 9, 2026